View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_13 (Length: 448)
Name: NF11466_low_13
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 33267864 - 33268271
Alignment:
| Q |
1 |
gactcatattatgatatgtaatttaaaataaaattaataaattaagaattagagttgttcgatctatatccaacggtagagataccttgatagcatgacc |
100 |
Q |
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| T |
33267864 |
gactcatattatgatatgtactttaaagtaaaattaataaagtaagaattagagttgttcgatctttattcaacggtagagataccttgatagcatgacc |
33267963 |
T |
|
| Q |
101 |
gtgcatttttccctaactaaattaaggtagatatttcaggaatgaagaagaagagatgtatcttggtgtccctttgatgtgctatgagtcatgcatgata |
200 |
Q |
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| T |
33267964 |
gtgcatttttccgtaactaaattaaggtagatatttcaggaatgaagaagaagagatgtatcttggtgtccctttgatgtgctatgagtcatgcatgata |
33268063 |
T |
|
| Q |
201 |
tgaaataacaacaaacaagacaaggatgtgtgtgcacccacagaaaagttatagaagcatggtccctttcaagtttcaaccccacgtattacttattagt |
300 |
Q |
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| T |
33268064 |
tgaaataacaacaaacaagacaaggatgtgtgtgcacccacagaaaagttatagaagcatggtccctttcaagtttcaaccccacgtattacttat---- |
33268159 |
T |
|
| Q |
301 |
tattactactaataattaacaaaactttgttaattattttaatattttatcaactgtttaattaattaaaagtatgtagccatttgacttttttagccct |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268160 |
------tactaa------------ctttgttaattattttaatattttatcaactgtttaattaattaaaagtatgtagccatttgacttttttagccct |
33268241 |
T |
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| Q |
401 |
tcacttattgagagtttatgtcatcatcat |
430 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33268242 |
tcacttattgagagtttatgtcatcatcat |
33268271 |
T |
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