View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_14 (Length: 411)
Name: NF11466_low_14
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 53212612 - 53212976
Alignment:
| Q |
7 |
gcatcatgatacttgttaggattatgttaactagtgtcccataacactaattaagaaaacaaaaacgaaattttttatcttaaaaactagaacccttaac |
106 |
Q |
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| T |
53212612 |
gcatcatgatacttgttaggattatgttaactagtgtcccataacactaattaagaaaacaaaaacgaaaaattttactttaaaaactagaacccttaac |
53212711 |
T |
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| Q |
107 |
attttccaaaagtttattgctctatttgatcccttaacaaatgtaattagttgtcagcatttttggtaagtgtaagtaattggaataaagccaaataata |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53212712 |
attttccaaaagtttattgctctatttgatcccttaacaaatgtaattagttgtcagcatttttggtaagtgtaagtaattggaataaaaccaaataata |
53212811 |
T |
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| Q |
207 |
tactaagatcgtgacaattgaaccaatccgttaagtttcttgatgccaacaacacaagtatgtattcacgtgaaattgccttagcttgatgatatgtagt |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53212812 |
tactaagatcgtgacaattgagccaatccgttaagtttcttgatgccaacaacacaagtatgtattcacgtgaaattgccttagcttgatgatatgtagt |
53212911 |
T |
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| Q |
307 |
cattgttgcttacttgattgcagtattgtcattatcaattcatcatttttcttatccttcttgtc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53212912 |
cattgttgcttacttgattgcagtattgtcattatcaattcatcatttttcttatccttcttgtc |
53212976 |
T |
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