View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_19 (Length: 344)
Name: NF11466_low_19
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 612803 - 612528
Alignment:
| Q |
1 |
aaagacaagaaccagtgcacagcacaatgcccaccacaacgcatcatgaactcttctccgcaccggccttcgaagaaaatccattgctctttgcctcatt |
100 |
Q |
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| T |
612803 |
aaagacaagaaccagtgcacagcacaatgcccaccacaacgcatcatgaactcttctccgcaccggccttcgaagaaaatccattgctctttgcctcatt |
612704 |
T |
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| Q |
101 |
ttccaaacttgttcaaaatcccgatcaaaggttatggaaatgacaaccttaatgaatctctccttgatcggcttcaaaacaagtttttcttcaaatagtt |
200 |
Q |
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| T |
612703 |
ttccaaacttgttcaaaatcccgatcaaaggttatggaaatgacaaccttaatgaatctctccttgatcggcttcaaaacaagtttttcttcaaatagtt |
612604 |
T |
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| Q |
201 |
tgtttctctttgcctgcgtatgggagtaacacaattatataatttttgactcaaatatacacacacctctcatatg |
276 |
Q |
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| T |
612603 |
tgtttctctttgcctgcgtatgggagtaacacaattatataatttttgactcaaatatacacacacctctcatatg |
612528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 612499 - 612455
Alignment:
| Q |
286 |
gtatagaaataactcatgaatttgaaaaattcaatataatatagt |
330 |
Q |
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| T |
612499 |
gtatagaaataactcatgaatttgaaaaatttaatataatatagt |
612455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 4618167 - 4618079
Alignment:
| Q |
16 |
tgcacagcacaatgcccaccacaacgcatcatgaactcttctccgcaccggccttcgaagaaaatccattgctctttgcctcattttccaaa |
107 |
Q |
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| T |
4618167 |
tgcacagcataatgcccaccacaatgcatcaggaacctttctccgtactggccttc---gaaaatctgttgctctacgcctcattttccaaa |
4618079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 37477643 - 37477683
Alignment:
| Q |
125 |
tcaaaggttatggaaatgacaaccttaatgaatctctcctt |
165 |
Q |
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| T |
37477643 |
tcaacggttatggaaatgacaaccttgatgaatctttcctt |
37477683 |
T |
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