View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11466_low_2 (Length: 739)

Name: NF11466_low_2
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11466_low_2
NF11466_low_2
[»] chr6 (1 HSPs)
chr6 (7-181)||(11077103-11077273)
[»] chr4 (1 HSPs)
chr4 (495-648)||(19217936-19218089)
[»] chr3 (3 HSPs)
chr3 (264-437)||(28244783-28244956)
chr3 (495-605)||(31286222-31286333)
chr3 (494-591)||(31276199-31276296)
[»] chr1 (4 HSPs)
chr1 (264-440)||(16572831-16573009)
chr1 (540-612)||(16573208-16573281)
chr1 (563-646)||(26472684-26472768)
chr1 (506-603)||(25143908-25144006)
[»] chr2 (3 HSPs)
chr2 (506-605)||(34724266-34724366)
chr2 (505-648)||(22115289-22115435)
chr2 (177-263)||(29861918-29862004)
[»] chr5 (1 HSPs)
chr5 (494-591)||(36076326-36076422)
[»] chr7 (1 HSPs)
chr7 (209-263)||(39249649-39249703)
[»] scaffold0036 (1 HSPs)
scaffold0036 (177-238)||(28728-28789)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 11077273 - 11077103
Alignment:
Q  7 caactatgaggtgagtaaagccttccctatttattttccagcattcccatgtacacactccatgttctagtaagaagggcaccacaagcaagctataatt 106  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  11077273 caactatgaggtgagtaaagccttccctatttc----ccagcattcccatgtacacactccatgttccagcaagaagggcaccacaagcaagctataatt 11077178  T
Q  107 ctttgattgtaaccctttaaccaattaccattggactctcgaaaaagaccactacacacgcaaattctattgaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11077177 ctttgattgtaaccctttaaccaattaccattggactctcgaaaaagaccactacacacgcaaattctattgaat 11077103  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 495 - 648
Target Start/End: Complemental strand, 19218089 - 19217936
Alignment:
Q  495 gaaaatgtcatttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttcaaaa-cc 593  Q
    |||||||| ||||||||||||| ||||||| ||||| || | || | ||||||||| ||||| ||  ||||||||||||||||||||  |||||||| ||    
T  19218089 gaaaatgttatttttcttcgttttttgagtgatctt-ttctatgttgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaacc 19217991  T
Q  594 ttcttgaactcctttgttcgctatgctcttgcctccataattccatgtgatgtct 648  Q
    |||||||||||||||| ||   || ||||||||||||||| |||| |||||||||    
T  19217990 ttcttgaactcctttgatcttcattctcttgcctccataactccacgtgatgtct 19217936  T

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Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 264 - 437
Target Start/End: Complemental strand, 28244956 - 28244783
Alignment:
Q  264 acaagaaaagattacataacatactcacaagagagaaaattgggagaaaccttagtttccacctccttgatgatagccttgctccttgccttcatcttgc 363  Q
    ||||||||  |||||| ||||||||   |||  |||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||| | |||    
T  28244956 acaagaaagaattacaaaacatactttgaaggaagaaaattgggagaaaccctagcttcctcatccttgatgatagccttgctccttgccttcaccatgc 28244857  T
Q  364 actgtttggttttcgaatgaataaaatgtttgcaagggttccccatatataggcaaatttagaactaggttgtt 437  Q
    || ||   ||||  ||||||| ||| |||||||||||| || |  |||||| | || |||||||||||||||||    
T  28244856 accgtccagtttcggaatgaagaaagtgtttgcaaggggtctctctatataagtaagtttagaactaggttgtt 28244783  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 495 - 605
Target Start/End: Original strand, 31286222 - 31286333
Alignment:
Q  495 gaaaatgtcatttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttcaaaa-cc 593  Q
    |||||||||||||||||| |||||||||||  |||||||   |||||| || ||||||||||||| |||||||| |||||||||||| |||| |||| ||    
T  31286222 gaaaatgtcatttttctttgttctttgagtggtcttcttccatgcttttattttggaacttgggatattatttttccacattgtattgtctttaaaatcc 31286321  T
Q  594 ttcttgaactcc 605  Q
    || |||||||||    
T  31286322 ttattgaactcc 31286333  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 591
Target Start/End: Original strand, 31276199 - 31276296
Alignment:
Q  494 ggaaaatgtcatttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttcaaaa 591  Q
    |||||||||  ||||||||  | |||| |||  ||||||||  |||||||||| | ||| |||||| ||||||||||||||||||||| |||| ||||    
T  31276199 ggaaaatgttgtttttctttttccttttagtggtcttcttacatgctttcatcatagaatttgggatattattttcccacattgtattgtctttaaaa 31276296  T

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Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 440
Target Start/End: Original strand, 16572831 - 16573009
Alignment:
Q  264 acaagaaaagattacataacatactcacaagagagaaaattgggagaaaccttagtttccacctccttgatgatagccttgctccttgccttcat--ctt 361  Q
    ||||||||  |||||| |||||||||  ||| |||||||||||  |||||| ||  |||| | ||||||||||||| | | |||||||||||||   |||    
T  16572831 acaagaaagaattacaaaacatactctaaagggagaaaattggatgaaaccatatcttcctcatccttgatgatagacctactccttgccttcacacctt 16572930  T
Q  362 gcactgtttggttttcgaatgaataaaatgtttgcaagggttccccatatataggcaaatttagaactaggttgttggg 440  Q
    ||||  | ||||||  ||||||||||| |||||| ||||| || ||||||| | |||| ||| ||||||||||||||||    
T  16572931 gcaccatctggtttatgaatgaataaagtgtttgtaaggggtctccatatacatgcaagttttgaactaggttgttggg 16573009  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 16573208 - 16573281
Alignment:
Q  540 tttcatcttggaacttgggacattattttcccacattgtattatcttcaaaa-ccttcttgaactcctttgttc 612  Q
    ||||||||||| || ||| |||||||||||||||| | ||||||||| |||| ||||||| |||||||||||||    
T  16573208 tttcatcttgggacctggaacattattttcccacactatattatctttaaaacccttcttaaactcctttgttc 16573281  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 646
Target Start/End: Original strand, 26472684 - 26472768
Alignment:
Q  563 tattttcccacattgtattatcttcaaaa-ccttcttgaactcctttgttcgctatgctcttgcctccataattccatgtgatgt 646  Q
    ||||||||| ||||||||| |||  |||| |||| ||||| ||||||||||   || |||||||||||||||||||||| |||||    
T  26472684 tattttcccgcattgtattgtctcaaaaaaccttattgaaatcctttgttcttcattctcttgcctccataattccatgcgatgt 26472768  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 603
Target Start/End: Complemental strand, 25144006 - 25143908
Alignment:
Q  506 ttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttc-aaaaccttcttgaact 603  Q
    |||||||| ||||||  || |||||||| | | |||||||||||  | |||||||||| | |||||| ||||| || ||||| ||||||||||||||||    
T  25144006 ttttcttcattctttatgtgatcttcttttatactttcatcttgagagttgggacattttgttcccatattgtgttgtcttcaaaaaccttcttgaact 25143908  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 34724266 - 34724366
Alignment:
Q  506 ttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttca-aaaccttcttgaactc 604  Q
    ||||||||||||||||| | ||||||||   | ||||||||||||||||||||| | ||||||| | ||||||||| |||| | ||||||||||||||||    
T  34724266 ttttcttcgttctttgattgatcttcttcaatactttcatcttggaacttgggatactattttctctcattgtattgtctttacaaaccttcttgaactc 34724365  T
Q  605 c 605  Q
    |    
T  34724366 c 34724366  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 505 - 648
Target Start/End: Original strand, 22115289 - 22115435
Alignment:
Q  505 tttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatctt---caaaaccttcttgaa 601  Q
    ||||||||| || ||||||| ||||||||   |||||||||||||  || |||||||||||||| ||  |||||||||||||    |||| |||||||||    
T  22115289 tttttcttcattgtttgagtgatcttctttgatgctttcatcttgatacctgggacattatttttcctaattgtattatcttaaaaaaaaacttcttgaa 22115388  T
Q  602 ctcctttgttcgctatgctcttgcctccataattccatgtgatgtct 648  Q
    |||||||| ||   ||  |||||||| ||||| || |||||||||||    
T  22115389 ctcctttgatcttcattatcttgcctacataactctatgtgatgtct 22115435  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 29861918 - 29862004
Alignment:
Q  177 tgaatatagaaattgcattaatggatttcaagaaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatg 263  Q
    |||||| |||| || |||||||  ||||||| ||| ||||| |||| |||  |||||| ||||||| ||||||||||||||||||||    
T  29861918 tgaataaagaagttacattaattaatttcaacaaacaaatagaggtacatcataaaacgctaatcaaagagagtttagttgctcatg 29862004  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 591
Target Start/End: Original strand, 36076326 - 36076422
Alignment:
Q  494 ggaaaatgtcatttttcttcgttctttgagtaatcttcttatttgctttcatcttggaacttgggacattattttcccacattgtattatcttcaaaa 591  Q
    |||||||||||||||| |||||||||| |||  | ||||| | |||||||||||  | ||||| ||||| ||||| ||||||||||||  ||||||||    
T  36076326 ggaaaatgtcattttt-ttcgttctttaagtgtttttcttctatgctttcatctatggacttgagacataatttttccacattgtattgccttcaaaa 36076422  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 39249649 - 39249703
Alignment:
Q  209 aaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatg 263  Q
    ||||||||| |||||||||||| ||||||||||  |||| |||||||| ||||||    
T  39249649 aaataaatagaggttcattttagaaccctaatcttagagtgtttagttactcatg 39249703  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 28728 - 28789
Alignment:
Q  177 tgaatatagaaattgcattaatggatttcaagaaataaatataggttcattttaaaacccta 238  Q
    |||||| ||||||||||||||| ||||| |  ||||||||| |||||||| ||| |||||||    
T  28728 tgaataaagaaattgcattaatagattttaccaaataaataaaggttcatcttagaacccta 28789  T

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