View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_23 (Length: 310)
Name: NF11466_low_23
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 51454654 - 51454944
Alignment:
| Q |
1 |
tggtgaaggtgataatgatgccgggggctcttcatcatttcaactggtgagaaagagacgcggcagaaagataaaggcggagaaggaaaccaccaaaaat |
100 |
Q |
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| T |
51454654 |
tggtgaaggtgataatgatgccggcggctcttcatcatttcaaccggtgagaaagagacgcggcagaaagagaaaggtggagaaggaaaccaccaaaaat |
51454753 |
T |
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| Q |
101 |
gaggttccacaagtccacaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttatatgtttgagtttg |
200 |
Q |
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| T |
51454754 |
gaggttccacaagtcctcaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttatatgtttgagtttg |
51454853 |
T |
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| Q |
201 |
gcattatatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagaga |
291 |
Q |
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| T |
51454854 |
gcattatatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagaga |
51454944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 51496350 - 51496432
Alignment:
| Q |
209 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagaga |
291 |
Q |
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| T |
51496350 |
tgtatgtaattgtgattctgttaatgtttctcaatcaacagtggatcgaagaggaatccttgatgtgccatcaatgtcagaga |
51496432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 7996867 - 7996980
Alignment:
| Q |
183 |
tttatatgtttgagtttggcattatatgt---atgtaattgtggttctgttact-gtttttcaatcaacagtggattgaagagggatccttaatgtgtca |
278 |
Q |
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| T |
7996867 |
tttacatgtttgagtttggaattatatgttgcatgtaattgtcattctgttaattgtttttcaatcaacggtggattgaagaggaatccttaacgagcca |
7996966 |
T |
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| Q |
279 |
tcaatgtcagagat |
292 |
Q |
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| T |
7996967 |
tcaatgtcaaagat |
7996980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 30208553 - 30208492
Alignment:
| Q |
209 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatcctta |
270 |
Q |
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| T |
30208553 |
tgtatgtaattgtggttctgttactgtttctcaatcaataggggattgaagatgggtcctta |
30208492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 51479399 - 51479454
Alignment:
| Q |
236 |
ttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagaga |
291 |
Q |
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| T |
51479399 |
ttttcaattaacagtggattgcagaggagtccttaatgtgccatcaatgtcagaga |
51479454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 43160047 - 43160133
Alignment:
| Q |
26 |
ggctcttcatcatttcaactggtgagaaagagacgcggcagaaagataaaggcggagaaggaaaccaccaaaaatgaggttccacaa |
112 |
Q |
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| T |
43160047 |
ggctcttcatcatttcaaccggagagaaagaaatgcggcagaaagagaaaatcggagaaggaaaccaccgaaaatgaggttccacaa |
43160133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 27395515 - 27395564
Alignment:
| Q |
238 |
ttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtca |
287 |
Q |
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| T |
27395515 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtca |
27395564 |
T |
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