View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11466_low_27 (Length: 287)
Name: NF11466_low_27
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 19478498 - 19478242
Alignment:
| Q |
11 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19478498 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
19478399 |
T |
|
| Q |
111 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaagggaaataaaaggaccttttgagttctcaactaatggaaatttttgtcacat--tcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
19478398 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaaggaaaataaaaggaccttttgagttctcaactaatggaaactgttgtcacatggtcca |
19478299 |
T |
|
| Q |
209 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19478298 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
19478242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 19549422 - 19549166
Alignment:
| Q |
11 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19549422 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
19549323 |
T |
|
| Q |
111 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaagggaaataaaaggaccttttgagttctcaactaatggaaatttttgtcacat--tcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
19549322 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaaggaaaataaaaggaccttttgagttctcaactaatggaaactgttgtcacatggtcca |
19549223 |
T |
|
| Q |
209 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19549222 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
19549166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 19583266 - 19583522
Alignment:
| Q |
11 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19583266 |
cataggaacaatgtcaatagtgttggttgtagatgatgtagtaattatgctttgattgaagatatttgaagaagattaagaggttttgagattttgattt |
19583365 |
T |
|
| Q |
111 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaagggaaataaaaggaccttttgagttctcaactaatggaaatttttgtcacat--tcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
19583366 |
ctcaaatttgcagaaaaaatgtgtttatactttctgaagaaaggaaaataaaaggaccttttgagttctcaactaatggaaactgttgtcacatggtcca |
19583465 |
T |
|
| Q |
209 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19583466 |
gttatgaagagcatcagttgcatgatgagcattaagtgacagttggaagtcttaggt |
19583522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University