View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_28 (Length: 281)
Name: NF11466_low_28
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 43059112 - 43058860
Alignment:
| Q |
13 |
gagagttgaagaaagtttacaagtagaagaatgacaaattttaatcaaatttatgctcaaatagataccggtagtgaccttatatggttccaatgcattc |
112 |
Q |
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| T |
43059112 |
gagagttgaagaaagtttacaagtagaagaatgacaaattttaatcaaatttatgctcaaatagataccggtagtgaccttacatggttccaatgcattc |
43059013 |
T |
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| Q |
113 |
cttgcactaactgctacaaacaactaaaccctatctcctccacttactccaacatcgcatgtggat------tagagtcatgttctaaactctattcacg |
206 |
Q |
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| T |
43059012 |
cttgcactaaatactacaaacaactaaaccctatctcctccacttactccaacatcgcatgtggattagatttagagtcatgttctaaactctattc--- |
43058916 |
T |
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| Q |
207 |
aacctcgtgttctccggataaaaatcaattgcatctacacctatttttatgctgac |
262 |
Q |
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| T |
43058915 |
aacctcgtgttctccggataaaaatcaattgcatctacacctatttttatgctgac |
43058860 |
T |
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Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 24547322 - 24547124
Alignment:
| Q |
64 |
tatgctcaaatagataccggtagtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactaaaccctat---------------ct |
148 |
Q |
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| T |
24547322 |
tatgctcaagtagataccggtagtgaccttatatggctccaatgcattccttgcactaactgctacaaacaactcaaccctatgtttgatcctcagagct |
24547223 |
T |
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| Q |
149 |
cctccacttactccaacatcgcatgtggattagagtcatgttctaaactctattcacgaacctcgtgttctccggataaaaatcaattgcatctacacct |
248 |
Q |
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| T |
24547222 |
cctccacttactccaacatcgcttatggatcagagtcatgttctaaactctattc---aacctcgtgttctcctgatcaaaa-caattgcaactacactt |
24547127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 24539918 - 24539851
Alignment:
| Q |
79 |
accggtagtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactaaaccctat |
146 |
Q |
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| T |
24539918 |
accggcagtgaccttgtatggttccaatgcattccttgcaccaaatgctataaacaacaaaaccctat |
24539851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 64 - 262
Target Start/End: Complemental strand, 15798436 - 15798227
Alignment:
| Q |
64 |
tatgctcaaatagataccggtagtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactaaaccctat---------------ct |
148 |
Q |
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| T |
15798436 |
tatgctcaagcagataccggtagtgaccttatatggctccaatgcattccttgcactaactgttacaaacaactaaaccctatgtttgatagtcagagct |
15798337 |
T |
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| Q |
149 |
cctccacttactccaacatcgcatgtggattagagtcatgttctaaactctattcacgaacctcgtgttctccggataaaaatcaattgcatctacacct |
248 |
Q |
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| T |
15798336 |
cctccactttctccaacatcgcatgtggatcagagtcatgttctaaactctattc---aacctcgtgttctccagat-caaatcaattgcaaatacaact |
15798241 |
T |
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| Q |
249 |
atttttatgctgac |
262 |
Q |
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||| ||||| |||| |
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| T |
15798240 |
attcttatgttgac |
15798227 |
T |
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