View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_30 (Length: 249)
Name: NF11466_low_30
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35165733 - 35165483
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggaaa---------- |
90 |
Q |
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| T |
35165733 |
gcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatgaggagattattttgaa |
35165634 |
T |
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| Q |
91 |
------gacaaaag-------aaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtatggacattctttt |
177 |
Q |
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| T |
35165633 |
gcttttgacaaaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtatggacattctttt |
35165534 |
T |
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| Q |
178 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagttt |
228 |
Q |
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| T |
35165533 |
tgagtgtgtttgatcaaattatatagaagatatgttaaaacacaagagttt |
35165483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 44792008 - 44792147
Alignment:
| Q |
88 |
aaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtatggacattctttttgagtgtgtt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
44792008 |
aaagacaaaagaaatatcaatgaagcaatttgcttggtcttacaatgaggtttcaaaacatgattttgagtactgtagggacattc-ttttgagtgtgtt |
44792106 |
T |
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| Q |
188 |
tgatcaaattatatagaagatatgttaaaacacaagagttt |
228 |
Q |
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| T |
44792107 |
tgatcaaattatatagaagatatgttaaaacacaagagttt |
44792147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44791884 - 44791967
Alignment:
| Q |
1 |
gcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatg |
84 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44791884 |
gcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaatatagttatatggtacaaatgatg |
44791967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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