View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_32 (Length: 242)
Name: NF11466_low_32
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 20364655 - 20364875
Alignment:
| Q |
19 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctttaacaggc |
118 |
Q |
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| T |
20364655 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatttgttgttgttgcagttagacagctaggttctcctttaacaggc |
20364754 |
T |
|
| Q |
119 |
tccggtgtctggctatcaagatcgataataatagaattggattgaaaattttcatcaacaacaatagtgacattatcttctcctatgccaccattagtat |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
20364755 |
tccggtgtctggctatcaagatcgataacaatagaatcggattgaaaattttcatcagcaacaatagtgacattatcttctactatgacaccattagtat |
20364854 |
T |
|
| Q |
219 |
ctgttgttgttgcagttagac |
239 |
Q |
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|||||||||||||||||||| |
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| T |
20364855 |
ttgttgttgttgcagttagac |
20364875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 20372577 - 20372800
Alignment:
| Q |
19 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctttaacaggc |
118 |
Q |
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|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20372577 |
aacattttcatcagcaacaatagtgacattatcttccactatgacaccattagtatctgttgttgttgcagttagacagctaggttctcctttaacaggc |
20372676 |
T |
|
| Q |
119 |
tccggtgtctggctatcaagatcgataataatagaattggattgaaaattttcatcaacaacaatagtgacattatcttctcctatgccaccattagtat |
218 |
Q |
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| T |
20372677 |
tccggtgtctggctatcaagatcgataacaatagaatcggattgaacattttcatcagcaacaatagtgacattatcttctactattacaccattagtat |
20372776 |
T |
|
| Q |
219 |
ctgttgttgttgcagttagacagc |
242 |
Q |
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||||||||||| |||||| |||| |
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| T |
20372777 |
ttgttgttgttggagttaggcagc |
20372800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 20364802 - 20365022
Alignment:
| Q |
22 |
attttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctttaacaggctcc |
121 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20364802 |
attttcatcagcaacaatagtgacattatcttctactatgacaccattagtatttgttgttgttgcagttagacggctaggttctcctttaacaggctct |
20364901 |
T |
|
| Q |
122 |
ggtgtctggctatcaagatcgataataatagaattggattgaaaattttcatcaacaacaatagtgacattatcttctcctatgccaccattagtatctg |
221 |
Q |
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| T |
20364902 |
agtgtctggctatcaagatcgataacaatagaatcggattgaacattttcatcagcaacaatagtgacattatcttctactattacaccattagtatttg |
20365001 |
T |
|
| Q |
222 |
ttgttgttgcagttagacagc |
242 |
Q |
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||||||||| |||||| |||| |
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| T |
20365002 |
ttgttgttggagttaggcagc |
20365022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 20372520 - 20372656
Alignment:
| Q |
109 |
tttaacaggctccggtgtctggctatcaagatcgataataatagaattgg---attgaaaattttcatcaacaacaatagtgacattatcttctcctatg |
205 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||||| || |||||| |||||||||| |||||||||||||||||||||| ||||| |
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| T |
20372520 |
tttaacaggctccggtatctggatatcaagatcgataacaatagaatcggccgattgaacattttcatcagcaacaatagtgacattatcttccactatg |
20372619 |
T |
|
| Q |
206 |
ccaccattagtatctgttgttgttgcagttagacagc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
20372620 |
acaccattagtatctgttgttgttgcagttagacagc |
20372656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 20364601 - 20364734
Alignment:
| Q |
109 |
tttaacaggctccggtgtctggctatcaagatcgataataatagaattggattgaaaattttcatcaacaacaatagtgacattatcttctcctatgcca |
208 |
Q |
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|
|||||||||||| ||| ||||||||||||||||||||| |||||||| |||| ||| ||||||||| ||||| ||||||||||||||||| ||||| || |
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| T |
20364601 |
tttaacaggctctggtatctggctatcaagatcgataacaatagaatcggatagaacattttcatccgcaacattagtgacattatcttctactatgaca |
20364700 |
T |
|
| Q |
209 |
ccattagtatctgttgttgttgcagttagacagc |
242 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
20364701 |
ccattagtatttgttgttgttgcagttagacagc |
20364734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 20385355 - 20385446
Alignment:
| Q |
19 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctt |
110 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
20385355 |
aacattttcatccgcagcaatagtgacattatcttctactattgcaccattagtatttgttgttgttgcagttaggcagctaggttctcctt |
20385446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 20364943 - 20365034
Alignment:
| Q |
19 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctt |
110 |
Q |
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|
|||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||| |||||| |
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| T |
20364943 |
aacattttcatcagcaacaatagtgacattatcttctactattacaccattagtatttgttgttgttggagttaggcagctaggtcctcctt |
20365034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 20372721 - 20372812
Alignment:
| Q |
19 |
aacattttcatccgcaacattagtgacattatcttctactatgacaccattagtatatgttgttgttgcagttagacagctaggttctcctt |
110 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||| |||||| |
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| T |
20372721 |
aacattttcatcagcaacaatagtgacattatcttctactattacaccattagtatttgttgttgttggagttaggcagctaggtcctcctt |
20372812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 20385292 - 20385434
Alignment:
| Q |
109 |
tttaacaggctccggtgtctggctatcaagatcgata-at--------aatagaattggattgaaaattttcatcaacaacaatagtgacattatcttct |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || |||||||| |||||||| ||||||||| || |||||||||||||||||||| |
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| T |
20385292 |
tttaacaggctccggtgtctggctttcaagatcgatacatttacaacgaatagaatcggattgaacattttcatccgcagcaatagtgacattatcttct |
20385391 |
T |
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| Q |
200 |
cctatgccaccattagtatctgttgttgttgcagttagacagc |
242 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||| |||| |
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| T |
20385392 |
actattgcaccattagtatttgttgttgttgcagttaggcagc |
20385434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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