View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11466_low_4 (Length: 651)

Name: NF11466_low_4
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11466_low_4
NF11466_low_4
[»] chr7 (1 HSPs)
chr7 (7-633)||(44670584-44671226)


Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 7 - 633
Target Start/End: Original strand, 44670584 - 44671226
Alignment:
Q  7 agaagcagagaggaagaaaaggatagccaagtataaagttcacagcgtggaagggaaagttaaagctacactcaagaaaggacttcgatggatcaagaaa 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670584 agaagcaaagaggaagaaaaggatagccaagtataaagttcacagcgtggaagggaaagttaaagctacactcaagaaaggacttcgatggatcaagaaa 44670683  T
Q  107 aaatgctctcaaatcactcatggctactaatag------ctagtacttttattcaatgtacaaatgcattaatgttacggtcatcaatatctgataatgc 200  Q
    |||||||||||||||||||||||||||||||||      ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44670684 aaatgctctcaaatcactcatggctactaatagtaatagctattacttttatgcaatgtacaaatgcattaatgttacggtcatcaatatctgataatgc 44670783  T
Q  201 attgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaattgattttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670784 attgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaattgattttaa 44670883  T
Q  301 ttactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaatatatcttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670884 ttactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaatatatcttc 44670983  T
Q  401 tgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaataagaaagtagggggaggaaatgcaaggtgcataataaaaccatcacgttccg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44670984 tgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaagaagaaagtagggggaggaaatgcaaggtgcataataaaaccatgacgttccg 44671083  T
Q  501 tagtagtttatttcacaacctaaaagggattgattaatacaatttaatttaatcctcctccctaa------------tatggatattacttattaacatt 588  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||            ||||| |||||||||||||||||    
T  44671084 tagtagtttattt--caacctaaaagggatagattaatacaatttaatttaatcctcctccctaatatgatatcgactatggttattacttattaacatt 44671181  T
Q  589 tcttcatttctctgtttctttttgccttcaaccttccccatcaat 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44671182 tcttcatttctctgtttctttttgccttcaaccttccccatcaat 44671226  T

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