View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_5 (Length: 631)
Name: NF11466_low_5
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 36092041 - 36092339
Alignment:
| Q |
13 |
caaaggtcgagtgtatggtcttggaatggaatctaatgtattagtagggaaggggaggtcaaattatcgtggctcatgttcttcatcaactgagtgggta |
112 |
Q |
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| T |
36092041 |
caaaggtcgagtgtatggtcttggaatggaatctactgtattagtagggaaggggaggccaaattatcgtggctcatgttcttcatcaactgagtgggta |
36092140 |
T |
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| Q |
113 |
caaagacatgaacttgaagaaatgagaaatgaaagagatcaacaaagacatgaatttgaggaaatgagaaaggaaagaaatcaacttcgtaaggaattgg |
212 |
Q |
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| T |
36092141 |
caaagacatgaacttgaagaaatgagaaatgaaagagatcaacaaagacatgaatttgaggaaatgagaaaggaaagaaatcaacttcgtaaggaattgg |
36092240 |
T |
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| Q |
213 |
ttaatacaaatagagctgttgagcaaaacaaccaaatgctaaaacaattgatggaaagcttgaactttcggcacatgtcatataccagagaccgagttc |
311 |
Q |
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| T |
36092241 |
ttaatacaaatagagctgttgagcaaaacaaccaaatgctaaaacaattgatggaaagcttgaactttcggcacatgtcatataccagagaccgagttc |
36092339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 467 - 631
Target Start/End: Original strand, 36092483 - 36092655
Alignment:
| Q |
467 |
agtactttcaagcacttaatattaaatgtttaattgactgtctctataagccttttttctagtagttgttat--------attatataatctatgttgta |
558 |
Q |
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| T |
36092483 |
agtactttcaagcacttaatattaaatgtttaattgactgtctctataagccttttttctagtagttgttatataattatattatataatctatgttgta |
36092582 |
T |
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| Q |
559 |
caaatatttattaattatgcatagcagcccagcggtaaacaagactaatacctgtgatgtaggttcagatcat |
631 |
Q |
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| T |
36092583 |
caaatatttattaattatgcatagcagcccagcggtaaacaagactaatacctgtgatgtaggttcagatcat |
36092655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 36092404 - 36092471
Alignment:
| Q |
376 |
ggaattagatagtgaatctgaatgnnnnnnnttatgttgcatcttgttaggactaaaacatatgatgt |
443 |
Q |
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| T |
36092404 |
ggaattagatagtgaatctgaaagaaaaaaattatgttgcatcttgttaggaccaaaacatatgatgt |
36092471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 34565623 - 34565706
Alignment:
| Q |
72 |
caaattatcgtggctcatgttcttcatcaactgagtgggtacaaagacatgaacttgaagaaatgagaaatgaaagagatcaac |
155 |
Q |
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| T |
34565623 |
caaattatcatggctctggttcttcttcatccgagtgggtgcaaaggcacgagcttgaacaaatgagaaatgaaagagatcaac |
34565706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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