View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11466_low_8 (Length: 583)
Name: NF11466_low_8
Description: NF11466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11466_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 9 - 567
Target Start/End: Original strand, 10378560 - 10379118
Alignment:
| Q |
9 |
gagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378560 |
gagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactct |
10378659 |
T |
|
| Q |
109 |
gggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378660 |
gggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttg |
10378759 |
T |
|
| Q |
209 |
acccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378760 |
acccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatc |
10378859 |
T |
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| Q |
309 |
aactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378860 |
aactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctca |
10378959 |
T |
|
| Q |
409 |
agaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgt |
508 |
Q |
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| T |
10378960 |
agaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgt |
10379059 |
T |
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| Q |
509 |
gtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatg |
567 |
Q |
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| T |
10379060 |
gtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatg |
10379118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 311 - 474
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
311 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
410 |
Q |
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|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
| Q |
411 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
474 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 299
Target Start/End: Original strand, 31329213 - 31329456
Alignment:
| Q |
54 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
153 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
|
| Q |
154 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
250 |
Q |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31329409 |
T |
|
| Q |
251 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
299 |
Q |
| |
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||| ||||||| | |||||||||||| ||||||| |||||||||||| |
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| T |
31329410 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31329456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 299
Target Start/End: Original strand, 31335934 - 31336177
Alignment:
| Q |
54 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
153 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
|
| Q |
154 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
250 |
Q |
| |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31336130 |
T |
|
| Q |
251 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
299 |
Q |
| |
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||| ||||||| | |||||||||||| ||||||| |||||||||||| |
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| T |
31336131 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31336177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 31326625 - 31326664
Alignment:
| Q |
9 |
gagatgaaaggatggaaatgcctccatgcgtacacttatg |
48 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||| |
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| T |
31326625 |
gagatgaaatgatggaaatgcctccatgcgtacaattatg |
31326664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 328 - 445
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
328 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
427 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
428 |
caagaattggagttcctt |
445 |
Q |
| |
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||| || ||||||||||| |
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| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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