View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11467_high_11 (Length: 306)

Name: NF11467_high_11
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11467_high_11
NF11467_high_11
[»] chr2 (4 HSPs)
chr2 (1-291)||(16919879-16920170)
chr2 (214-270)||(7429889-7429945)
chr2 (193-285)||(44913374-44913466)
chr2 (193-269)||(44919386-44919462)
[»] chr6 (7 HSPs)
chr6 (132-284)||(2742739-2742891)
chr6 (156-290)||(287474-287608)
chr6 (199-267)||(21379342-21379410)
chr6 (217-263)||(29144396-29144442)
chr6 (221-267)||(34259155-34259201)
chr6 (221-267)||(34264520-34264566)
chr6 (200-285)||(21375232-21375317)
[»] chr5 (10 HSPs)
chr5 (214-266)||(27174371-27174423)
chr5 (214-267)||(42782293-42782346)
chr5 (214-284)||(32642041-32642111)
chr5 (214-286)||(9052385-9052457)
chr5 (229-281)||(42835410-42835462)
chr5 (193-267)||(42797142-42797216)
chr5 (193-267)||(16487605-16487679)
chr5 (201-267)||(24654592-24654658)
chr5 (161-267)||(42841485-42841591)
chr5 (170-247)||(39725460-39725537)
[»] chr3 (1 HSPs)
chr3 (214-291)||(9704362-9704439)
[»] chr1 (2 HSPs)
chr1 (169-286)||(344207-344324)
chr1 (197-267)||(51875569-51875639)
[»] chr7 (3 HSPs)
chr7 (169-263)||(5441486-5441580)
chr7 (169-263)||(5450496-5450590)
chr7 (214-262)||(42445433-42445481)
[»] scaffold0054 (1 HSPs)
scaffold0054 (223-267)||(34362-34406)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 16919879 - 16920170
Alignment:
Q  1 tgaaatggttatgttttaaattttgtgaannnnnnnagaattcctcaatttcgtgtaatttattccactttatagtcatgatacaaatgaattttgcttg 100  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16919879 tgaaatggttatgttttaaattttgtgaatttttttagaattcctcaatttcgtgtaatttattccactttatagtcatgatacaaaggaattttgcttg 16919978  T
Q  101 atannnnnnn-gtttgaattggtatttcagcttttggagatgaagaaattcgtgtctgccacaaatgttaaggttagcaacaatatacctgaagatcttg 199  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16919979 atattttttttgtttgaattggtatttcagcttttggagatgaagaaattcgtgtctgccacaaatgttaaggttagcaacaatatacctgaagatcttg 16920078  T
Q  200 tcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcat 291  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16920079 tcttctctgtcctttcaacattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcat 16920170  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 7429945 - 7429889
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcc 270  Q
    |||||||| ||  ||||||||||||||||||||||||||||| | ||||||||||||    
T  7429945 tcaaaattgccaataaaatctttgaagcgatttggatgcgtatgcaaatcatgggcc 7429889  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 44913466 - 44913374
Alignment:
Q  193 gatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaac 285  Q
    |||||||| |||||| | || |||||| |  || |||||||||| || ||||||||||||||| ||||| ||||| | || || |||||||||    
T  44913466 gatcttgtattctctattctgtcaaaactttctttaaaatctttaaaacgatttggatgcgtatgtaaaccatggactttcttatttgaaaac 44913374  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 44919462 - 44919386
Alignment:
Q  193 gatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggc 269  Q
    |||||||  |||||| | || |||||| | ||| |||||||||| |||| ||||| ||| |||||||||||||||||    
T  44919462 gatcttgcattctctattctgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatgggc 44919386  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 284
Target Start/End: Complemental strand, 2742891 - 2742739
Alignment:
Q  132 tttggagatgaagaaattcgtgtctgccacaaatgttaaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaa 231  Q
    |||| ||||||||||| | |||  ||| | |||||| |||||||||||  ||||| | |||||||||| | ||||| |||| | |||||| |||||||||    
T  2742891 tttgaagatgaagaaaattgtgggtgctataaatgtaaaggttagcaatcatatatccgaagatcttgccctctctatcctgttaaaattgcctctaaaa 2742792  T
Q  232 tctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaa 284  Q
    ||||| |||||||||||||||||| |||||||||||| | | |||||||||||    
T  2742791 tctttaaagcgatttggatgcgtatgtaaatcatgggtcctcttgtttgaaaa 2742739  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 287608 - 287474
Alignment:
Q  156 tgccacaaatgttaaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgta 255  Q
    |||||||||| ||||| ||||  || ||||| | |||||| |  |||||||| || |||||||||| |||||||||||||| || ||||||||||| |||    
T  287608 tgccacaaatcttaagtttagtgaccatatatcagaagatttgatcttctctatcttttcaaaattgcctctaaaatctttaaaacgatttggatgtgta 287509  T
Q  256 cgtaaatcatgggcctttttgtttgaaaaccttca 290  Q
     ||||||||||| |  | ||||||||||| |||||    
T  287508 tgtaaatcatggactctcttgtttgaaaatcttca 287474  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 21379410 - 21379342
Alignment:
Q  199 gtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||||||| | || || || |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  21379410 gtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatgg 21379342  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 29144396 - 29144442
Alignment:
Q  217 aaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatc 263  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  29144396 aaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatc 29144442  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 34259201 - 34259155
Alignment:
Q  221 tacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||||    
T  34259201 tacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatgg 34259155  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 34264566 - 34264520
Alignment:
Q  221 tacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||||    
T  34264566 tacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatgg 34264520  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 21375317 - 21375232
Alignment:
Q  200 tcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaac 285  Q
    |||||||| | || || |||||| |||| |||||||||||| |||||||||||||   |||||||||| || | || |||||||||    
T  21375317 tcttctctattctatcgaaattatctcttaaatctttgaagtgatttggatgcgtctataaatcatggtccctcttatttgaaaac 21375232  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 27174423 - 27174371
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatg 266  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27174423 tcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatg 27174371  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 42782293 - 42782346
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  42782293 tcaaaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatgg 42782346  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 32642041 - 32642111
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaa 284  Q
    |||||||||||||| ||||||||| ||| ||||| ||  ||||||||||||||| | ||||||||||||||    
T  32642041 tcaaaattacctcttaaatctttgtagcaatttgaatatgtacgtaaatcatggtcatttttgtttgaaaa 32642111  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 9052385 - 9052457
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaacc 286  Q
    |||||||||||| |||||||||| |||  ||||||||||||||| ||||||||  || |||||||||| ||||    
T  9052385 tcaaaattacctgtaaaatctttaaagaaatttggatgcgtacgcaaatcatgaacccttttgtttgagaacc 9052457  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 42835462 - 42835410
Alignment:
Q  229 aaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttga 281  Q
    ||||||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  42835462 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttgtttga 42835410  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 42797216 - 42797142
Alignment:
Q  193 gatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    |||||| |||||||| | || |||||||||||| | |||||||||||||||||| |||  |||| ||||||||||    
T  42797216 gatcttttcttctctattctctcaaaattacctattaaatctttgaagcgattttgatatgtacttaaatcatgg 42797142  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 16487679 - 16487605
Alignment:
Q  193 gatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    |||||| |||||||| | || |||||| ||||| | |||||||||||| | |||||||||||||  |||||||||    
T  16487679 gatcttttcttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatgg 16487605  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 24654592 - 24654658
Alignment:
Q  201 cttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||||| | ||||| ||||||||| ||||||| || ||||| ||||| || |||||||||||||||    
T  24654592 cttctctattctttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatgg 24654658  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 42841591 - 42841485
Alignment:
Q  161 caaatgttaaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaa 260  Q
    |||||||| ||||||||||  | ||||| || ||| ||||||||| | | || |||||| | ||| |  |||||||||||| ||||| |||||||| |||    
T  42841591 caaatgttcaggttagcaatcacatacccgatgatattgtcttctatattctctcaaaactccctattgaatctttgaagccatttgaatgcgtacataa 42841492  T
Q  261 atcatgg 267  Q
    |||||||    
T  42841491 atcatgg 42841485  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 39725537 - 39725460
Alignment:
Q  170 aggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttg 247  Q
    ||||||||||  || ||||||| ||| ||||||||||| | || |||||| | ||| | |||||||||||||||||||    
T  39725537 aggttagcaatcatgtacctgatgatattgtcttctctattctgtcaaaacttcctttcaaatctttgaagcgatttg 39725460  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 9704362 - 9704439
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcat 291  Q
    |||||||||||||| |||||||| || |||||| |||| || |||||||||||| |  |||| |||||||||| ||||    
T  9704362 tcaaaattacctctgaaatctttaaaacgatttagatgtgttcgtaaatcatggacacttttatttgaaaaccatcat 9704439  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 344207 - 344324
Alignment:
Q  169 aaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatggg 268  Q
    ||||||| |||  |||||||| | |||||| |||||| ||| || || ||||||||| | || |||||||| || |||||||||||| ||||||| |  |    
T  344207 aaggttaacaaacatatacctaatgatcttatcttctttgttctatctaaattacctttgaagtctttgaaacgttttggatgcgtaagtaaatcttatg 344306  T
Q  269 cctttttgtttgaaaacc 286  Q
    || |||| ||||||||||    
T  344307 cccttttatttgaaaacc 344324  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 51875639 - 51875569
Alignment:
Q  197 ttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||||||||  | || |||||| |||||||  ||||||| |||||||||||||| ||| |||||||||||    
T  51875639 ttgtcttctcgattctatcaaaactacctcttcaatctttaaagcgatttggatgtgtatgtaaatcatgg 51875569  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 5441486 - 5441580
Alignment:
Q  169 aaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatc 263  Q
    |||||||| ||  |||||||| | ||||||||||||||| |  | |||||||| ||| | ||||| ||||| || |||||||||||||| |||||    
T  5441486 aaggttagaaatgatatacctaatgatcttgtcttctctattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatc 5441580  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 5450496 - 5450590
Alignment:
Q  169 aaggttagcaacaatatacctgaagatcttgtcttctctgtcctttcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaatc 263  Q
    |||||||| ||  |||||||| | ||||||||||||||| |  | |||||||| ||| | ||||| ||||| || |||||||||||||| |||||    
T  5450496 aaggttagaaatgatatacctaatgatcttgtcttctctattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatc 5450590  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 42445433 - 42445481
Alignment:
Q  214 tcaaaattacctctaaaatctttgaagcgatttggatgcgtacgtaaat 262  Q
    |||||||||||||| |||||||| |||||||||| ||| || |||||||    
T  42445433 tcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaat 42445481  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 34406 - 34362
Alignment:
Q  223 cctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgg 267  Q
    ||||| ||||||||||| |||||| ||||||| ||||||||||||    
T  34406 cctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatgg 34362  T

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