View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_15 (Length: 282)
Name: NF11467_high_15
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 51729402 - 51729154
Alignment:
| Q |
19 |
aaaagtttcactgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagagaaagattaca--caatagtgtcaaaagtaatcaaa |
116 |
Q |
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| T |
51729402 |
aaaagcttcactgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagagaaagattacagacaatagtgtcaaaagtaatcaaa |
51729303 |
T |
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| Q |
117 |
gaagaattccacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgatttacagcataactctcatttctttttcgacaactt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729302 |
gaagaattccacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgatttacagcataactctcatttctttttcgacaactt |
51729203 |
T |
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| Q |
217 |
tgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729202 |
tgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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