View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_19 (Length: 269)
Name: NF11467_high_19
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 4275375 - 4275594
Alignment:
| Q |
33 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
132 |
Q |
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| T |
4275375 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
4275474 |
T |
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| Q |
133 |
tattttaagactgtacggttatccctgtatttcc-gggggatgtctattctgtccccttctacttcatcaaatctcacacctatccttcccttcttagtt |
231 |
Q |
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| T |
4275475 |
tattttaagactgtacggttatccctgtatttccggggggatgtctattctgtccccttctacttcatcaaatctcacacctatccttcccttcttagtt |
4275574 |
T |
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| Q |
232 |
ggttttctttttctacaaac |
251 |
Q |
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| T |
4275575 |
ggttttctttttctacaaac |
4275594 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 34795068 - 34795002
Alignment:
| Q |
155 |
ccctgtatttccggg-ggatgtctattctgtccccttctacttcatcaaatctcacacctatccttc |
220 |
Q |
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| T |
34795068 |
ccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttc |
34795002 |
T |
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