View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_3 (Length: 494)
Name: NF11467_high_3
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 145 - 384
Target Start/End: Complemental strand, 41547531 - 41547293
Alignment:
| Q |
145 |
taatctcaaaccccaaagataaacccaacaacagnnnnnnnnnctctctttcaacaaaacaaacnnnnnnnnnngttagcatattttaaggaaacaaatc |
244 |
Q |
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| T |
41547531 |
taatctcaaaccccaaagataaacccaacaacagtttttttttctctctttcaacaaaacaaacaaaaaaaaa-gttagcatattttaaggaaacaaatc |
41547433 |
T |
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| Q |
245 |
aaacccatcaaagattcagcnnnnnnntcacctttccccacagaattatcttcaaagatcaaatctttaacaccaaatgaattgaaatttcggcaaattc |
344 |
Q |
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| T |
41547432 |
aaacccatcaaagattcaacaaaaaaatcacctttccccacagtattatcttcaaagatcaaatctttaacaccaaatgaattgaaatttcggcaaattc |
41547333 |
T |
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| Q |
345 |
atgcaaaatgtgagatcggggtatattcggattccatcac |
384 |
Q |
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| T |
41547332 |
atgcaaaatgtgagatcggggtatattcggattccatcac |
41547293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41547675 - 41547632
Alignment:
| Q |
1 |
agagagagagaaaacaactcacgaattgtgtaaacagtgttccg |
44 |
Q |
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| T |
41547675 |
agagagagaaaaaacaactcacgaattgtgtaaacagtgttccg |
41547632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 41547246 - 41547210
Alignment:
| Q |
441 |
catgatttcaagtacccatgaacaagataattggatt |
477 |
Q |
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| T |
41547246 |
catgatttcaagtacccatgaacaagataattggatt |
41547210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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