View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11467_high_4 (Length: 467)

Name: NF11467_high_4

Description: NF11467

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11467_high_4

[»] chr4 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 375; E-Value: 0

Query Start/End: Original strand, 1 - 467

Target Start/End: Original strand, 21719498 - 21719967

Alignment:

Q	1	taataatggattagacatctataaccatcaaaagagtgagttagacaccgcaacatcatctaaaatctcatgcattagatatatgaattaacgcttttaa	100	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	21719498	taataatggactagacatctataaccatcaaaagagttaattagacactgcaacttcatctaaaatctcatgcattagatatatgaattaactcttttaa	21719597	T

Q	101	aaagaatgagaagagaggggaaatatgatttggtgtgaatgatgcattgtttatatctaacaatcatacaagatctaataatggagactaaaaataaata	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21719598	aaagaatgagaagagagggaaaatatgatttggtgtgaacgatacattatttatatctaacaatcatacaagatctaataatagagactaaaaataaata	21719697	T

Q	201	tggtctaatatgaaccacctatagcaaggggtcatatttgcttttcctc--ctcttttgttgcttgtccttttgttttgttgacaatttcacattagaag	298	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	21719698	tggtctaatatgaaccacctatagcaaggggtcatatttgcttttcctcatctcttttgttgcttgtccttttgttttgttgacaatttcacattaaaag	21719797	T

Q	299	aatttttattgtttggatttcttttatacctttgttttcttgtgagatttatataaaactcacatatttggaaaaactattactcactctgtgttattat	398	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21719798	aatttttcttgtttggatttcttttatacctttgttttcttgtgagatttatataaaactcacatatttggaaaagctagtactcactctgtgttattat	21719897	T

Q	399	aaatctcatgtttataactattaccttcttaaattattgattac-ttcaaatatacagaacattcattat	467	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21719898	aaatctcatgtttataacttttaccttcttaaattattgatcactttaaaatataaagaacattcattat	21719967	T

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