View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_6 (Length: 398)
Name: NF11467_high_6
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7143285 - 7142914
Alignment:
| Q |
1 |
agacgtcggcaaaaagaaagaaaacgaccaaggtaacatattgttttactattgttatattcttagcaaaatatttggcctcttaagaaataaatcttaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7143285 |
agacgtcggcaaaaagaaagaaaaggaccaaggtaacatattgttttactattgttatattcttagcaaaatatttggcctcttaagaaataaatcttaa |
7143186 |
T |
|
| Q |
101 |
aaagaagaccaaggtaaccatattgttttacccttgttataacctttacggctatatgatattttcttcttctctaatcatttctttttcatttgtcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
7143185 |
aaagaagaccaaggtaaccatattgttttacccttgttataacctttactgctatatgatatttccttcttctctaatcatttcttttttatttgtcttg |
7143086 |
T |
|
| Q |
201 |
cagagggtgaaatcctctcatcaagcaccaagagagaagatggtaatgccaaatgctcaaacgactagggaaacgcctagatccacaaccatggttaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7143085 |
cagagggtgaaatcctctcatcaagcaccaagagagaagatggtaatgccaaatgctcaaacgactagggaaacgcctagatccacaaccatggttaatt |
7142986 |
T |
|
| Q |
301 |
tcttgtttgactaatgattaatttttattttactcgttcggataaaagtcttcaataattttgcatgttttt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7142985 |
tcttgtttgactaatgattaatttttattttactcgttcggataaaagtcttcaataattttgcatgttttt |
7142914 |
T |
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