View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_7 (Length: 397)
Name: NF11467_high_7
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 39480701 - 39481082
Alignment:
| Q |
17 |
agataaaagttgtggtatgccttgtgttagtggaagaggtagttaagtgcgtaattccaatgcaccattcatcttctcatctgtcatgtcctctccctat |
116 |
Q |
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| T |
39480701 |
agataaaagttgtggtatgccttgtgttagtggaagaggtagataagtgcgtaattccaatgcaccattcatcttctcatctgtcatgtcctctccctat |
39480800 |
T |
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| Q |
117 |
atatatactactctactgagcatcctttgtcctacccccaactctcatctcacgttcatcaagcaatggctcacaacaatgtctaggctttgctcaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480801 |
atatatactactctactgagcatcctttgtcctacccccaactctcatctcacgttcatcaagcaatggctcacaacaatgtctaggctttgctcaaata |
39480900 |
T |
|
| Q |
217 |
ccattgctggacaggtaattatctattctccatggtnnnnnnnttaaacatactctatctatatccacttgactgnnnnnnnatgatga-tttttgttgt |
315 |
Q |
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| T |
39480901 |
ccattgctggacaggtaattatctattctccatggtaaaaaaattaaacatactctatctatatccacttgactgtttttttatgatgattttttgttgt |
39481000 |
T |
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| Q |
316 |
gtttacatggcagcacctttggatcccaatcctagaaaaaattgaatttcac--ctctcactgatgcgctctttcttctctc |
395 |
Q |
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| T |
39481001 |
gtttacatggcagcacctttggatcccaatcctagaaaaaattgaatttcacttctctcactgatgcgctctttcttctctc |
39481082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 6308972 - 6308785
Alignment:
| Q |
64 |
tgcgtaattccaatgcaccattcatcttctcatctgtcatgtcctctccctatatatatactactctactgagcatcctttgtcctacccccaactctca |
163 |
Q |
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| T |
6308972 |
tgcgtaattccaatgcaccatacatcttctcatatatcatgtcctctccctatatatatactactctactgagcctcctttgtcctacccgcaactctta |
6308873 |
T |
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| Q |
164 |
tctcacgttcatcaagcaatggctcacaacaatgtctaggctttgctcaaataccattgctggacaggtaattatctattctccatgg |
251 |
Q |
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| T |
6308872 |
tctcacgttcatcaagcaatgactcacaacaatgtctacgctttgctataataccattgtttgacaggtaaatgttgattctccatgg |
6308785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 6302162 - 6301975
Alignment:
| Q |
64 |
tgcgtaattccaatgcaccattcatcttctcatctgtcatgtcctctccctatatatatactactctactgagcatcctttgtcctacccccaactctca |
163 |
Q |
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| T |
6302162 |
tgcgtaattccaatgcaccatacatcttctcatatatcatgtcctctccctatatatatactactctactgagcctcctttgtcctacccgcaactctta |
6302063 |
T |
|
| Q |
164 |
tctcacgttcatcaagcaatggctcacaacaatgtctaggctttgctcaaataccattgctggacaggtaattatctattctccatgg |
251 |
Q |
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| T |
6302062 |
tctcacgttcatcaagaaatgactcacaacaatgtctacactttgctataataccattgtttgacaggtaaatgttgattctccatgg |
6301975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 6301945 - 6301846
Alignment:
| Q |
306 |
tttttgttgtgtttacatggcagcacctttggatcccaatcct-------agaaaaaattgaatttcac--ctctcactgatgcgctctttcttctctct |
396 |
Q |
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| T |
6301945 |
tttttgttgtgtttacgtggcagcacctttggatcccaatcatgtagctaaaaaaaaattgaatttcacttctctcattgatgcgctatttcttctctct |
6301846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 6308755 - 6308656
Alignment:
| Q |
306 |
tttttgttgtgtttacatggcagcacctttggatcccaatcct-------agaaaaaattgaatttcac--ctctcactgatgcgctctttcttctctct |
396 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
6308755 |
tttttgttgtgtttacgtggcagcacctttggatcccaatcatgtagctaaaaaaaaattgaatttcacttctctcattgatgcgctatttcttctctct |
6308656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 64 - 251
Target Start/End: Original strand, 2440353 - 2440540
Alignment:
| Q |
64 |
tgcgtaattccaatgcaccattcatcttctcatctgtcatgtcctctccctatatatatactactctactgagcatcctttgtcctacccccaactctca |
163 |
Q |
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| T |
2440353 |
tgcgtaattccaatgcaccatacatcttctcatatatcatgtcctctccctatatatatactactctactgagcctcctttgtcctacccgcaactctta |
2440452 |
T |
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| Q |
164 |
tctcacgttcatcaagcaatggctcacaacaatgtctaggctttgctcaaataccattgctggacaggtaattatctattctccatgg |
251 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||| | ||||||||| | | ||||||||||| |
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| T |
2440453 |
tctcacgttcatcaagaaatgactcacaacaatgtctaccctttgctctaataccattgtttgacaggtaaatgttgattctccatgg |
2440540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 2440570 - 2440668
Alignment:
| Q |
306 |
tttttgttgtgtttacatggcagcacctttggatcccaatc------ctagaaaaaattgaatttcac--ctctcactgatgcgctctttcttctctct |
396 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||| || |||||||||||| |
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| T |
2440570 |
tttttgttgtgtttacgtggcagcacctttggatcccaatcatgtagctaaaaaaaattgaatttcacttctctcattgatgcactatttcttctctct |
2440668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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