View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_high_8 (Length: 375)
Name: NF11467_high_8
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 2912465 - 2912823
Alignment:
| Q |
1 |
aaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaattctattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912465 |
aaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctggggtccaaattgatataagaaatccatgcatgcatgtttgaaattctattttg |
2912564 |
T |
|
| Q |
101 |
tagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtgtctggaccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912565 |
tagcttcggaatctatgtaaaagctttgtaaatctatctatctatatctatgtataaacctttacaattattgcatcaatgattataagtgtctggaccg |
2912664 |
T |
|
| Q |
201 |
agttagttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaatattttcttcgatttgacaaagtaaaagaacctgtaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2912665 |
agttagttttatgattatgaatttataatgtttctttagctaatttgtaacaaaggtagtcaatattttcttcgatttgacaaagtaaaagaacctgtaa |
2912764 |
T |
|
| Q |
301 |
aaccaatttttaagaagtattagagatnnnnnnnccgaaactaacacgagtagtttctg |
359 |
Q |
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| T |
2912765 |
aaccaatttttaaaaagtattagaggtaaaaaaaccgaaactaacacgagtagtttctg |
2912823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38025146 - 38025194
Alignment:
| Q |
13 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
61 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38025146 |
gagtctctaaggactgtcatgtacttgagctgctggggtcctaattgat |
38025194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38031886 - 38031934
Alignment:
| Q |
13 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
61 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
38031886 |
gagtctttgaggactgtcatgtacttgagctgctggggtcctaattgat |
38031934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 2915055 - 2915113
Alignment:
| Q |
205 |
agttttatgattatgaatttataacgtttctttagctaatttgtaacaaaggtagtgaa |
263 |
Q |
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|||||||||||||||||||| ||| ||||||| || ||||||||| |||||||| |||| |
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| T |
2915055 |
agttttatgattatgaatttttaatgtttcttcaggtaatttgtaccaaaggtaatgaa |
2915113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38003635 - 38003683
Alignment:
| Q |
13 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
61 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
38003635 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
38003683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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