View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_1 (Length: 579)
Name: NF11467_low_1
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 17724625 - 17725188
Alignment:
| Q |
18 |
aggatagatcagaactattaagtgtatttcaaagtttctttaaggaaatttaaaattagtttggttgttctattcccattttgtgcagtgataatgcaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
17724625 |
aggatagatcagaactattaagtgtatttcaaaatttctttaaggaaattcaaaatcagtttggttgttctattcgcattttgcgtagtgataatgcaaa |
17724724 |
T |
|
| Q |
118 |
-gagtatttttcaacatattttaattcttttatgtctgcaaacggagtgatacatcagtcatcttgtccccataccccacaacaaaatggcattgctgaa |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17724725 |
agagtatttttcaacatcttttaattcttttatgtctgaaaacggagtgatacatcagtcatcttgtccccataccccacaacaaaatggcattgctgaa |
17724824 |
T |
|
| Q |
217 |
cgtaaacaccatcatataattgaaacaacatgtactttgcttattaatgccaatgttcctttgaaattttggggtgatgctgtcctcactgcaggatact |
316 |
Q |
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|||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17724825 |
cgtaaacaccgtcatataattgaaacagcacgtactttgcttattcatgccaatgttcctttgaaattttggggtgatgctgtcctcactgcaggatact |
17724924 |
T |
|
| Q |
317 |
t-------------gattaatagaatgtcataatctgcaatccaaaacaaggttactcattgcatattgttccctgattaacctttgtttcgtattgcac |
403 |
Q |
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| ||||||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||| | |
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| T |
17724925 |
tgattgatagaatggattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctc |
17725024 |
T |
|
| Q |
404 |
ctcgggtttttggatcaaattgnnnnnnncatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaag |
503 |
Q |
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||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725025 |
ctcggatttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaag |
17725124 |
T |
|
| Q |
504 |
agttcaaaaatgatatcggtgctattgtccctccacacatcgcttctacatgtttgctgatgtc |
567 |
Q |
| |
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| T |
17725125 |
agttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
17725188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 567
Target Start/End: Original strand, 13039245 - 13039793
Alignment:
| Q |
20 |
gatagatcagaactattaagtgtatttcaaagtttctttaaggaaatttaaaattagtttggttgttctattcccattttgtgcagtgataatgcaaa-g |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||| |||| | |
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| T |
13039245 |
gatagatcagaactattaagtgtatttcaaaatttctttaaggaaattcaaaaccagtttggttgttctattcgcattttgcgcagtgataattcaaaag |
13039344 |
T |
|
| Q |
119 |
agtatttttcaacatattttaattcttttatgtctgcaaacggagtgatacatcagtcatcttgtccccataccccacaacaaaatggcattgctgaacg |
218 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| |
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| T |
13039345 |
agtatttttcaacatcttttaattcttttatgtctgaaaacggagtgatacatcagtcatcttatccccatactccaaaacaaaatggcattgttgaacg |
13039444 |
T |
|
| Q |
219 |
taaacaccatcatataattgaaacaacatgtactttgcttattaatgccaatgttcctttgaaattttggggtgatgctgtcctcactgcaggatacttg |
318 |
Q |
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|||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13039445 |
taaacatcgtcatataattgaaacaacacgtactttgcttattaatgccaatgttcctttgaaattttggggtgatgctgtcctcactacaggatacttg |
13039544 |
T |
|
| Q |
319 |
attaatagaatgtcataatctgcaatccaaaacaaggttactcattgcatattgttccctgattaacctttgtttcgtattgcacctcgggtttttggat |
418 |
Q |
| |
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|||||||||||| ||| ||||| |||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
13039545 |
attaatagaatgccatcatctgtaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctcctcggatttttggat |
13039644 |
T |
|
| Q |
419 |
caaattgnnnnnnncatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaatgata |
518 |
Q |
| |
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| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13039645 |
ccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtaaaattaaatgtgtctttctaggctattcaagagttcaaaaaggata |
13039744 |
T |
|
| Q |
519 |
tcggtgctattgtccctccacacatcgcttctacatgtttgctgatgtc |
567 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13039745 |
tcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
13039793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 433 - 567
Target Start/End: Complemental strand, 11025977 - 11025843
Alignment:
| Q |
433 |
catgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaatgatatcggtgctattgtc |
532 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||| || ||||||||||| | ||| ||||| ||||||||||| |
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| T |
11025977 |
catgatcttactcaaggtttagataaaatgtttgctcgtgcagttaaatgtgtctttctcagcgattcaagagtttagaaaggatataagtgctattgtc |
11025878 |
T |
|
| Q |
533 |
cctccacacatcgcttctacatgtttgctgatgtc |
567 |
Q |
| |
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| || || ||| ||||||||||||||| ||||||| |
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| T |
11025877 |
catcaacgcatagcttctacatgtttgttgatgtc |
11025843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 4460084 - 4460023
Alignment:
| Q |
188 |
ataccccacaacaaaatggcattgctgaacgtaaacaccatcatataattgaaacaacatgt |
249 |
Q |
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|||| |||||||||||||||| ||||||| | ||||| | |||||| |||||||||||||| |
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| T |
4460084 |
atactccacaacaaaatggcaatgctgaaaggaaacatcgtcatattgttgaaacaacatgt |
4460023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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