View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_11 (Length: 365)
Name: NF11467_low_11
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 21719163 - 21719516
Alignment:
| Q |
18 |
gtttccgcctatggtcccaaacaattgtcttctccattttgtgacttctgatcctaaatgagagaaagtttggtcaataaaaattgatgatgaatttagt |
117 |
Q |
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| T |
21719163 |
gtttccgcttatggtcccaaacaattgtcttctccattttgtgacttctgatcctaaatgagagaaagtttgatcaataaaaattaatga---atttagt |
21719259 |
T |
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| Q |
118 |
ccaaattttgaatctattatgttaatttttgtcgatttaactttatactatatttagaaccgaagggattatttgttattataactgacataatttgtaa |
217 |
Q |
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||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||||| |
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| T |
21719260 |
tcaaattttgaatctattatattaatttttgttgacttaactttatactatatttagaatcggagggattatttgttattataactcatataatttgtaa |
21719359 |
T |
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| Q |
218 |
cgcaatctaatagttacttcaactattaggtggtccaccaaacattgtattttagcaccattagattaatcatattctcgtagaatgttgaacatcgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||| | |
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| T |
21719360 |
tgcaatctaatagttacttcaactattaggtggtccaccaaacatcatactttagcaccattagattaatcatatccttgtagaatgttgaacatcgtct |
21719459 |
T |
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| Q |
318 |
tg---------ttggggagtcttagaaagcgttaagagtaataatggattagacatc |
365 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21719460 |
tgttggggagtttggggagtcttagaaagcgttaagagtaataatggactagacatc |
21719516 |
T |
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