View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_18 (Length: 276)
Name: NF11467_low_18
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_18 |
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| [»] scaffold0635 (2 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2987 - 2807
Alignment:
| Q |
1 |
tcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaatcaca |
100 |
Q |
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| T |
2987 |
tcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaaccaca |
2888 |
T |
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| Q |
101 |
aaactttagtaac---ataactca-------accagttagaaaatgttaattagccaagaaaatttagagagaaaaatata |
171 |
Q |
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| T |
2887 |
aaactttagtaacataataactcagatcaacactagttagaaaatgttaattagcgaagaaaatttagagagaaaaatata |
2807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 2689 - 2629
Alignment:
| Q |
199 |
acaacaaagatttctcgacacgaaccatttgctgaagctacaaccttgagtgccttggtgc |
259 |
Q |
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| T |
2689 |
acaacaaagatttttcgacacgaaccgtttgctccagctacaacctcgagtgccttggtgc |
2629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 10105797 - 10105977
Alignment:
| Q |
1 |
tcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaatcaca |
100 |
Q |
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| T |
10105797 |
tcaacgtgacagcatctacaccatctccaataactactatcttgtctttctcatctccctctaatcccacaaaattcacacctgcatttaccaaaccaca |
10105896 |
T |
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| Q |
101 |
aaactttagtaac---ataactca-------accagttagaaaatgttaattagccaagaaaatttagagagaaaaatata |
171 |
Q |
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| T |
10105897 |
aaactttagtaacataataactcagatcaacactagttagaaaatgttaattagcgaagaaaatttagagagaaaaatata |
10105977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 10106095 - 10106155
Alignment:
| Q |
199 |
acaacaaagatttctcgacacgaaccatttgctgaagctacaaccttgagtgccttggtgc |
259 |
Q |
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| T |
10106095 |
acaacaaagatttttcgacacgaaccgtttgctccagctacaacctcgagtgccttggtgc |
10106155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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