View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_2 (Length: 554)
Name: NF11467_low_2
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_2 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 17006022 - 17006560
Alignment:
| Q |
1 |
tcaagttcttgaacatgttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaa |
100 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006022 |
tcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaa |
17006121 |
T |
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| Q |
101 |
ggtgaccctccaaaccagnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttcc |
200 |
Q |
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| T |
17006122 |
ggtgaccctccaaaccagaaaaaaa--ggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaacttcc |
17006219 |
T |
|
| Q |
201 |
atattggaaggacaatcttctgcgtcataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttca |
300 |
Q |
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| T |
17006220 |
atattggaaggacaatcttttgcgtcataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttca |
17006319 |
T |
|
| Q |
301 |
aagagtaaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccgacaattt |
399 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17006320 |
aagaataaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaattt |
17006419 |
T |
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| Q |
400 |
ttactttaactggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgactt |
499 |
Q |
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| T |
17006420 |
ttactttgactggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgactt |
17006519 |
T |
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| Q |
500 |
ggaagctcttaagttgaaaggaacattgaagagtcatgatg |
540 |
Q |
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| T |
17006520 |
ggaagctcttaagttgaaaggaatgttgaagagtcatgatg |
17006560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 26 - 540
Target Start/End: Complemental strand, 3050 - 2537
Alignment:
| Q |
26 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
125 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
126 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
225 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950 |
--ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
2853 |
T |
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| Q |
226 |
cataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
325 |
Q |
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| T |
2852 |
cataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
2753 |
T |
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| Q |
326 |
gaagagaccttgaagttatgggcataagatctga-ctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttaactggtaaaagtaagag |
424 |
Q |
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| T |
2752 |
gtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagag |
2653 |
T |
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| Q |
425 |
ggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctcttaagttgaaaggaaca |
524 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2652 |
ggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctcttaagttgaaaggaacg |
2553 |
T |
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| Q |
525 |
ttgaagagtcatgatg |
540 |
Q |
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|||||||||||||||| |
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| T |
2552 |
ttgaagagtcatgatg |
2537 |
T |
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Back To:
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