View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_23 (Length: 261)
Name: NF11467_low_23
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 30551559 - 30551309
Alignment:
| Q |
11 |
cagagatgggaagagtaagagtacatctcatttgaagtgtcaaatcaactagagaattgcagcgaaaaagtgaatccgaaggaagaaaaacattatcggc |
110 |
Q |
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| T |
30551559 |
cagatatgggaagactaagagtacatctcatttgaagcgtcaaatcgactagagaattgcagcgaaaaagtgaatcggaaggaaggaaaactttatcagc |
30551460 |
T |
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| Q |
111 |
atattgaatatgaagcttctgaactctcctttctaagataaaggaaatccattcacttatctgagatgtgtcatattgatgactagttaagcaaagagag |
210 |
Q |
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| T |
30551459 |
atattgaatatgaagcttttgaactctcctttctaggataaaggaaatccattcacttaacttagatgcatcatattgatggctagttaaggaaagagag |
30551360 |
T |
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| Q |
211 |
aaactttggatgctcgagttagtgaagtgaataagcactttttcaacaaaa |
261 |
Q |
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| T |
30551359 |
aaactttggatgcttgagttagtgaaatgaataagcactttttcaacaaaa |
30551309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 30560252 - 30560015
Alignment:
| Q |
27 |
aagagtacatctcatttgaagtgtcaaatcaactaga-gaattgcagcgaaaaagtgaatccgaaggaagaaaaacattatcggcatattgaatatgaag |
125 |
Q |
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| T |
30560252 |
aagaatacatctcatttgaagcgtcaattcgattaaaagatttgcagctaaaaagttaattagaagaaaggaaaactttatcggcatattgaatatgaag |
30560153 |
T |
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| Q |
126 |
cttctgaactctcctttctaagataaaggaaatccattcacttat--ctgagatgtgtcatattgatgactagttaagcaaagagagaaactttggatgc |
223 |
Q |
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| T |
30560152 |
cttctgaattctcgtttctaagataaagcaaatccattcacttatttctgagatgtatcatatggatgactagttaagcaaagaaagaaactttggatgc |
30560053 |
T |
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| Q |
224 |
tcgagttagtgaagtgaataagcactttttcaacaaaa |
261 |
Q |
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| T |
30560052 |
tcgagttagtgaagtgaataagcactttttcaacaaaa |
30560015 |
T |
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