View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11467_low_25 (Length: 249)
Name: NF11467_low_25
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 39839804 - 39839586
Alignment:
| Q |
12 |
atgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839804 |
atgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
39839705 |
T |
|
| Q |
112 |
ctcttggtagcacatgaacctgtggatnnnnnnnncagaacagcccaattagannnnnnnnncacaaaagttaaaaaagaattactatgaagcactgaca |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39839704 |
ctcttggtagcacatgaacctgtggataaaaaaaacagaacagcccaattaga--tttttttcacaaaagttaaaaaagaattactatgaagcactgaca |
39839607 |
T |
|
| Q |
212 |
cagataccagacacataaaag |
232 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39839606 |
cagataccagacacataaaag |
39839586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 39733154 - 39733372
Alignment:
| Q |
12 |
atgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
111 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733154 |
atgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
39733253 |
T |
|
| Q |
112 |
ctcttggtagcacatgaacctgtggatnnnnnnnncagaacagcccaattagannnnnnnnncacaaaagttaaaaaagaattactatgaagcactgaca |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39733254 |
ctcttggtagcacatgaacctgtggataaaaaaaacagaacagcccaattaga--tttttttcacaaaagttaaaaaagaattactatgaagcactgaca |
39733351 |
T |
|
| Q |
212 |
cagataccagacacataaaag |
232 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
39733352 |
catataccagacacataaaag |
39733372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 31290622 - 31290573
Alignment:
| Q |
84 |
aattcaaaagttgatattccaaatatttctcttggtagcacatgaacctg |
133 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
31290622 |
aattcaagagttgatattccaaatatttctcttggtaagacatgagcctg |
31290573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 29857039 - 29857150
Alignment:
| Q |
23 |
caaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagc |
122 |
Q |
| |
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|||||||||||||| ||||| || ||||||| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| || | |
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| T |
29857039 |
caaaatcaacaaaatcttgtcaactatccaaactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaa |
29857138 |
T |
|
| Q |
123 |
acatgaacctgt |
134 |
Q |
| |
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|||||||||||| |
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| T |
29857139 |
acatgaacctgt |
29857150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 17408416 - 17408332
Alignment:
| Q |
48 |
atccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacct |
132 |
Q |
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||||||| |||||||| |||| || |||||| |||| ||| |||||||| |||| |||||||| || |||| ||||||||||| |
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| T |
17408416 |
atccaaattggtaaccttttcatcaacataacagctacctcataagttgattttccgaatatttccctcggtaacacatgaacct |
17408332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
193 |
ttactatgaagcactgacacagataccaga |
222 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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