View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11467_low_3 (Length: 515)

Name: NF11467_low_3
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11467_low_3
NF11467_low_3
[»] chr7 (10 HSPs)
chr7 (17-169)||(32039099-32039251)
chr7 (17-163)||(32026966-32027112)
chr7 (415-494)||(29352501-29352580)
chr7 (187-220)||(32039261-32039294)
chr7 (415-482)||(6646361-6646428)
chr7 (408-475)||(6667704-6667771)
chr7 (187-217)||(32027134-32027164)
chr7 (407-484)||(9137241-9137318)
chr7 (408-480)||(17473506-17473578)
chr7 (408-480)||(17579636-17579708)
[»] chr3 (5 HSPs)
chr3 (407-494)||(2148030-2148117)
chr3 (416-484)||(3312727-3312795)
chr3 (408-484)||(33637694-33637770)
chr3 (409-475)||(4082017-4082083)
chr3 (432-484)||(41868109-41868161)
[»] chr4 (6 HSPs)
chr4 (408-484)||(5814631-5814707)
chr4 (408-484)||(6082184-6082260)
chr4 (452-482)||(9229720-9229750)
chr4 (451-484)||(26624001-26624034)
chr4 (408-481)||(26742217-26742290)
chr4 (408-481)||(51152418-51152491)
[»] chr1 (7 HSPs)
chr1 (408-484)||(47551380-47551456)
chr1 (407-479)||(28677883-28677955)
chr1 (431-482)||(12537827-12537878)
chr1 (408-479)||(13691516-13691587)
chr1 (451-493)||(15575782-15575824)
chr1 (407-483)||(15312371-15312447)
chr1 (408-484)||(28399089-28399165)
[»] chr5 (3 HSPs)
chr5 (408-475)||(20483495-20483562)
chr5 (408-484)||(11734590-11734666)
chr5 (432-484)||(29098080-29098132)
[»] chr6 (5 HSPs)
chr6 (408-482)||(31680722-31680796)
chr6 (407-484)||(12654062-12654139)
chr6 (408-468)||(13871370-13871431)
chr6 (407-484)||(20496478-20496555)
chr6 (408-484)||(12481124-12481200)
[»] chr8 (2 HSPs)
chr8 (407-484)||(32778724-32778801)
chr8 (408-475)||(24790921-24790988)
[»] chr2 (8 HSPs)
chr2 (408-484)||(15920159-15920235)
chr2 (408-475)||(34471269-34471336)
chr2 (408-470)||(38535049-38535112)
chr2 (408-481)||(7072719-7072792)
chr2 (407-484)||(11798281-11798358)
chr2 (408-481)||(30933536-30933609)
chr2 (408-484)||(4604061-4604137)
chr2 (407-479)||(5071122-5071194)
[»] scaffold0321 (1 HSPs)
scaffold0321 (408-475)||(6875-6942)
[»] scaffold1379 (1 HSPs)
scaffold1379 (432-494)||(850-912)
[»] scaffold0112 (1 HSPs)
scaffold0112 (415-479)||(25272-25336)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 32039099 - 32039251
Alignment:
Q  17 cagtaagggcattcatttctaattttctagagattttaatcctagctcagtaatggtacattaagtaggtgaaatattaatcaattaatcatcaataaaa 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32039099 cagtaagggcattcatttataattttctagagattttaatcctagctcagtaatggtacattaagtaggtgaaatattaatcaattaatcatcaataaaa 32039198  T
Q  117 attgtacagaagtacagacaataagccttactgaattcatgtaggtaaatctg 169  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32039199 attgtacggaagtacagacaataagccttactgaattcatgtaggtaaatctg 32039251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 32026966 - 32027112
Alignment:
Q  17 cagtaagggcattcatttctaattttctagagattttaatcctagctcagtaatggtacattaagtaggtgaaatattaatcaattaatcatcaataaaa 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026966 cagtaagggcattcatttataattttctagagattttaatcctagctcagtaatggtacattaagtaggtgaaatattaatcaattaatcatcaataaaa 32027065  T
Q  117 attgtacagaagtacagacaataagccttactgaattcatgtaggta 163  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  32027066 attgtacggaagtacagacaataagccttactgaattcatgtaggta 32027112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 29352580 - 29352501
Alignment:
Q  415 ctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagtttttggaata 494  Q
    ||||||||||  || | ||||| ||||||| ||||  |||||||| |||||||||| ||||||||||||| |||||||||    
T  29352580 ctcacaacattcatgttaatagtataaaatagaaaagtacatatgcctacaaatatgactatattcaagtctttggaata 29352501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 32039261 - 32039294
Alignment:
Q  187 atcggaaataaattctttcaaatggaatcttctg 220  Q
    ||||||||||||||||||||||||||||||||||    
T  32039261 atcggaaataaattctttcaaatggaatcttctg 32039294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 6646361 - 6646428
Alignment:
Q  415 ctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaa 482  Q
    ||||||||||| || | ||||||||||||||| |   |||||||| |||||||||| |||||||||||    
T  6646361 ctcacaacatccatgttaatagcataaaatggtagagtacatatgcctacaaatatgactatattcaa 6646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 6667771 - 6667704
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    |||||| ||||||||||| || | ||||||||||||||| ||  |||||||| |||||||||| ||||    
T  6667771 gaacaaactcacaacatccatgttaatagcataaaatggcaaagtacatatgcctacaaatatgacta 6667704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 32027134 - 32027164
Alignment:
Q  187 atcggaaataaattctttcaaatggaatctt 217  Q
    |||||||||||||||||||||||||||||||    
T  32027134 atcggaaataaattctttcaaatggaatctt 32027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 9137318 - 9137241
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    ||||||| |||||| |||| || | ||||||||||||||  ||  ||| ||||||||||||||| |||| ||||||||    
T  9137318 cgaacaaactcacatcatccatgttaatagcataaaatgacaaagtacttatgtctacaaatatgactaaattcaagt 9137241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 480
Target Start/End: Original strand, 17473506 - 17473578
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattc 480  Q
    |||||| ||||||||||| || | ||||| ||||||||| ||  ||||||||  ||||||||| |||||||||    
T  17473506 gaacaaactcacaacatccatgttaataggataaaatggcaaagtacatatgcttacaaatatgactatattc 17473578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 17579708 - 17579636
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattc 480  Q
    |||||| ||||||||||| || | ||||| ||||||||| ||  ||||||||  ||||||||| |||||||||    
T  17579708 gaacaaactcacaacatccatgttaataggataaaatggcaaagtacatatgcttacaaatatgactatattc 17579636  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 2148117 - 2148030
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagtttttggaata 494  Q
    ||||||| ||||||||||| |||| |||||||||||| || ||  |||| |||||||||||||| ||||||||||||| || ||||||    
T  2148117 cgaacaaactcacaacatccatattaatagcataaaacggcaaagtacaaatgtctacaaatatgactatattcaagtcttcggaata 2148030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 484
Target Start/End: Complemental strand, 3312795 - 3312727
Alignment:
Q  416 tcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||||||| || | |||||||||||| || || |||| |||| |||||||||| |||||||||||||    
T  3312795 tcacaacatccatgttaatagcataaaacggcaaaatacctatgcctacaaatatgactatattcaagt 3312727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 33637770 - 33637694
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| |||||| |||| || | ||||||||||||||| ||  ||| |||| |||||||||| |||||||||||||    
T  33637770 gaacaaactcacatcatccatgttaatagcataaaatggcaaggtacctatgcctacaaatatgactatattcaagt 33637694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 4082083 - 4082017
Alignment:
Q  409 aacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    ||||| ||||||||||| || | |||||||||||| |||||  |||||||| |||||||||| ||||    
T  4082083 aacaaactcacaacatccatgttaatagcataaaacggaaaagtacatatggctacaaatatgacta 4082017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 41868109 - 41868161
Alignment:
Q  432 aatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||||||||| || ||  ||| ||||||||||||||| |||||||||||||    
T  41868109 aatagcataaaacggcaaagtacctatgtctacaaatatgactatattcaagt 41868161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 5814707 - 5814631
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| ||||||||||| || | ||||||||||||||||||  ||  |||| |||||||||| |||||||||||||    
T  5814707 gaacaaactcacaacatccatgttaatagcataaaatggaaaagtatttatgcctacaaatatgactatattcaagt 5814631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 6082184 - 6082260
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| ||||||||||| || | |||||||||||| || ||  |||||||| |||||||||| |||||||||||||    
T  6082184 gaacaaactcacaacatccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagt 6082260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 482
Target Start/End: Original strand, 9229720 - 9229750
Alignment:
Q  452 tacatatgtctacaaatataactatattcaa 482  Q
    |||||||||||||||||||||||||||||||    
T  9229720 tacatatgtctacaaatataactatattcaa 9229750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 26624001 - 26624034
Alignment:
Q  451 atacatatgtctacaaatataactatattcaagt 484  Q
    |||||||||||||||||||| |||||||||||||    
T  26624001 atacatatgtctacaaatatgactatattcaagt 26624034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 481
Target Start/End: Original strand, 26742217 - 26742290
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattca 481  Q
    |||||| |||||| |||| || | |||||||||||| || || ||| ||||| |||||||||| ||||||||||    
T  26742217 gaacaaactcacatcatccatgttaatagcataaaacggcaaaatatatatgcctacaaatatgactatattca 26742290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 481
Target Start/End: Complemental strand, 51152491 - 51152418
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattca 481  Q
    |||||| ||||||||||| || | |||||||||||| || ||  ||||| || |||||||||| ||||||||||    
T  51152491 gaacaaactcacaacatccatgttaatagcataaaacggcaaagtacatttgcctacaaatatgactatattca 51152418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 47551456 - 47551380
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| |||||||||||||| | ||||||||||||||| ||  ||  |||| |||||||||| |||||||||||||    
T  47551456 gaacaaactcacaacatctatgttaatagcataaaatggcaaagtatctatgcctacaaatatgactatattcaagt 47551380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 28677883 - 28677955
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatatt 479  Q
    ||||||| ||||||||||| || | |||||||||||| |||||  ||| |||| |||||||||| ||||||||    
T  28677883 cgaacaaactcacaacatccatgttaatagcataaaacggaaaagtacctatgcctacaaatatgactatatt 28677955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 12537878 - 12537827
Alignment:
Q  431 caatagcataaaatggaaatatacatatgtctacaaatataactatattcaa 482  Q
    |||||||||||||| ||||  |||||||  ||||||||||||||||||||||    
T  12537878 caatagcataaaatagaaaagtacatatacctacaaatataactatattcaa 12537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 479
Target Start/End: Original strand, 13691516 - 13691587
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatatt 479  Q
    |||||| ||||||||||| || | |||||||||||| || || ||||||| | |||||||||| ||||||||    
T  13691516 gaacaaactcacaacatccatgttaatagcataaaacggcaaaatacataagcctacaaatatgactatatt 13691587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Complemental strand, 15575824 - 15575782
Alignment:
Q  451 atacatatgtctacaaatataactatattcaagtttttggaat 493  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||    
T  15575824 atacatatgtctacaaatataattatattcaattttctggaat 15575782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 483
Target Start/End: Original strand, 15312371 - 15312447
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaag 483  Q
    ||||||| ||||||||||| || | |||| ||||||| || |  ||||||||| |||||||||| ||||| ||||||    
T  15312371 cgaacaaactcacaacatccatgttaataacataaaacggcataatacatatggctacaaatatgactatgttcaag 15312447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 28399089 - 28399165
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| |||||| |||| || | |||||||||||| || ||  ||||||||  ||||||||| |||||||||||||    
T  28399089 gaacaaactcacatcatccatgttaatagcataaaacggcaaagtacatatgcttacaaatatgactatattcaagt 28399165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 20483562 - 20483495
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    |||||| ||||||||||| || | ||||||||||||||||||  |||||||| |||||||||| ||||    
T  20483562 gaacaaactcacaacatccatgttaatagcataaaatggaaaagtacatatgcctacaaatatgacta 20483495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 11734590 - 11734666
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| ||||||||| | || | |||||||||||| || ||  |||||||| |||||||||| |||||||||||||    
T  11734590 gaacaaactcacaacaaccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagt 11734666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 29098132 - 29098080
Alignment:
Q  432 aatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||||||||| || ||  |||||||| |||||||||| |||||||||||||    
T  29098132 aatagcataaaacggcaaggtacatatgcctacaaatatgactatattcaagt 29098080  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 31680796 - 31680722
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaa 482  Q
    |||||| |||||||| || |||| |||||||||||| || |  |||||||| | |||||||||||||||||||||    
T  31680796 gaacaaactcacaacttccatattaatagcataaaacggcagaatacatatatttacaaatataactatattcaa 31680722  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 12654062 - 12654139
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    ||||||| |||||| |||| || | |||||||||||| |  || ||||||||| |||||||||| |||||||||||||    
T  12654062 cgaacaaactcacatcatccatgttaatagcataaaacgacaaaatacatatgcctacaaatatgactatattcaagt 12654139  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 13871370 - 13871431
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaa-tggaaatatacatatgtctacaaat 468  Q
    |||||| ||||||||||| || | |||||||||||| |||||| ||||||||| ||||||||    
T  13871370 gaacaaactcacaacatccatgttaatagcataaaactggaaaaatacatatgcctacaaat 13871431  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 20496555 - 20496478
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    ||||||| ||||||||||| |||| |||||||||||| || ||  |||| | | ||||| |||| |||||||||||||    
T  20496555 cgaacaaactcacaacatccatattaatagcataaaacggcaaagtacaaaagcctacacatatgactatattcaagt 20496478  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 12481124 - 12481200
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| |||||| |||| || | |||||||||||| || ||  ||| |||| |||||||||| |||||||||||||    
T  12481124 gaacaaactcacatcatccatgttaatagcataaaacggcaaggtacctatgcctacaaatatgactatattcaagt 12481200  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 32778724 - 32778801
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    ||||||| ||||||||| | |||| |||||||||||| || ||  ||| |||| |||||||||| |||||||||||||    
T  32778724 cgaacaaactcacaacaaccatattaatagcataaaacggcaaagtacctatggctacaaatatgactatattcaagt 32778801  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 24790921 - 24790988
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    |||||| ||||||||||| || | ||||||||||||||| ||  |||||||| |||||||||| ||||    
T  24790921 gaacaaactcacaacatccatgttaatagcataaaatggcaaagtacatatgcctacaaatatgacta 24790988  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 15920235 - 15920159
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| ||| ||||||| || | |||||||||||| || ||  |||||||| |||||||||| |||||||||||||    
T  15920235 gaacaaactcgcaacatcaatgttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagt 15920159  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 475
Target Start/End: Complemental strand, 34471336 - 34471269
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    |||||| ||||||||||| || | |||||||||||| || || ||||||||| |||||||||| ||||    
T  34471336 gaacaaactcacaacatccatgttaatagcataaaacggcaaaatacatatgcctacaaatatgacta 34471269  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 38535049 - 38535112
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatgg-aaatatacatatgtctacaaatat 470  Q
    |||||| ||||||||||| || | |||||||||||| || |||| |||||||||||||||||||    
T  38535049 gaacaaactcacaacatccatgttaatagcataaaacggcaaatgtacatatgtctacaaatat 38535112  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 481
Target Start/End: Original strand, 7072719 - 7072792
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattca 481  Q
    |||||| ||||||||||| || | |||||||||||| || ||  || ||||| |||||||||| ||||||||||    
T  7072719 gaacaaactcacaacatccatgttaatagcataaaacggcaaagtatatatgcctacaaatatgactatattca 7072792  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 11798281 - 11798358
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    ||||||| ||||||||||| || | |||||||||||| |  ||  ||| |||| |||||||||| |||||||||||||    
T  11798281 cgaacaaactcacaacatccatgttaatagcataaaacgacaaagtacctatgcctacaaatatgactatattcaagt 11798358  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 481
Target Start/End: Complemental strand, 30933609 - 30933536
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattca 481  Q
    |||||| ||||||||||| || | |||||||||||| ||||| |||  |||| ||| |||||| ||||||||||    
T  30933609 gaacaaactcacaacatccatgttaatagcataaaacggaaaaatatttatgcctataaatatgactatattca 30933536  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 4604061 - 4604137
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatattcaagt 484  Q
    |||||| ||||||| ||| || | |||||||||||| || || |||  |||| |||||||||| |||||||||||||    
T  4604061 gaacaaactcacaatatccatgttaatagcataaaacggcaaaatatctatgcctacaaatatgactatattcaagt 4604137  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 5071122 - 5071194
Alignment:
Q  407 cgaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatatt 479  Q
    ||||||| ||||||||||| || | |||||||||||| || |  ||||||| | |||||||||| ||||||||    
T  5071122 cgaacaaactcacaacatccatgttaatagcataaaacggcataatacataagcctacaaatatgactatatt 5071194  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 6875 - 6942
Alignment:
Q  408 gaacaagctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataacta 475  Q
    |||||| ||||||||||| || | ||||||||||||||| ||  |||||||| |||||||||| ||||    
T  6875 gaacaaactcacaacatccatgttaatagcataaaatggtaaagtacatatgcctacaaatatgacta 6942  T

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Target: scaffold1379 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 494
Target Start/End: Original strand, 850 - 912
Alignment:
Q  432 aatagcataaaatggaaatatacatatgtctacaaatataactatattcaagtttttggaata 494  Q
    |||| ||||||| || || |||| ||||||||||||||| ||||||||||||| | |||||||    
T  850 aataacataaaacggcaaaatacttatgtctacaaatatgactatattcaagtctctggaata 912  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 25272 - 25336
Alignment:
Q  415 ctcacaacatctatatcaatagcataaaatggaaatatacatatgtctacaaatataactatatt 479  Q
    ||||||||||| || | ||||||||||||||| ||  |||||| | |||||||||| ||||||||    
T  25272 ctcacaacatccatgttaatagcataaaatggcaaagtacataggcctacaaatatgactatatt 25336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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