View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11467_low_6 (Length: 458)
Name: NF11467_low_6
Description: NF11467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11467_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 8338498 - 8338076
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8338498 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
8338399 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8338398 |
tcaattataacaaaagatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
8338299 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8338298 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaagattttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
8338199 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatgga |
417 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8338198 |
taggatggttgagaatgaggtg-ttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttaaatgga |
8338100 |
T |
|
| Q |
418 |
tgattgtgatgttgttgttgaaat |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8338099 |
tgattgtgatgttgttgttgaaat |
8338076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 21482605 - 21482186
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
|||| ||||||||||||||| ||| || | ||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| | |
|
|
| T |
21482605 |
ctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagcaag |
21482506 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||||||||||| ||| || |||||| | || ||||| ||||| ||||||| ||||||||||| ||||| |||||||| ||||| |||||| |||| |
|
|
| T |
21482505 |
tcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttgttacttttgaggcatt |
21482406 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
21482405 |
gaattgttgcttggacatgagaatcatcttttgcagttataattgccaaaggttttggtgttg---ttgttttaaatctcttgttttgtattttcatgtt |
21482309 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatgga |
417 |
Q |
| |
|
|||||| ||||||||||| | |||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||||| |||||| || |
|
|
| T |
21482308 |
gaggatggttgagaatgagat-attgtttggagtgtaaatgatatcagagatagaggaattcaaagattgagaaaagcaattgagaaaattttgaaaggg |
21482210 |
T |
|
| Q |
418 |
tgattgtgatgttgttgttgaaat |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21482209 |
tgattgtgatgttgttgttgaaat |
21482186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 36107872 - 36107515
Alignment:
| Q |
19 |
tttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggt |
118 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||| || || |
|
|
| T |
36107872 |
tttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgt |
36107773 |
T |
|
| Q |
119 |
caattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattt |
218 |
Q |
| |
|
||| ||||| | ||| ||||||||| | || || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36107772 |
caagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttgttgcttttggcacattt |
36107673 |
T |
|
| Q |
219 |
aattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgttt |
318 |
Q |
| |
|
||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||| |
|
|
| T |
36107672 |
aattgtttcttggatatgcgaatcatcttttgcagttataattgccaaaggttttggtgttgttgctgttttaaatctcttattttgtattttcatgttg |
36107573 |
T |
|
| Q |
319 |
aggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaat |
377 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| | |||||||||| | |||||| |
|
|
| T |
36107572 |
aggatagttgagaatgagg-cattgtttggtgtgtaagtaacttcagagacaagggaat |
36107515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 36100614 - 36100290
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
36100614 |
ctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaag |
36100515 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||||||||||| ||| || |||||| ||| ||||||||||| || ||||| ||||||||||| ||||||| || | |||||| |||||||||||| |
|
|
| T |
36100514 |
tcaattataacataaggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatt |
36100415 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||||| |||| |||||||| |||| ||||| |||||||||||||||||||||||| || |
|
|
| T |
36100414 |
taattgttgtttggacatgagaatcatcttttggagttataattgctaaagcttttggtgatgttgctgttttaaatctcttgttatgtattttcatatt |
36100315 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgttt |
342 |
Q |
| |
|
||||||| |||||||||||| |||| |
|
|
| T |
36100314 |
taggatggttgagaatgaggggttt |
36100290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 34971777 - 34972120
Alignment:
| Q |
23 |
caatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtcaat |
122 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
34971777 |
caattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaag |
34971876 |
T |
|
| Q |
123 |
tataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatttaatt |
222 |
Q |
| |
|
|| || | ||| ||||||||| || || || ||||| ||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
34971877 |
tacaataaaaggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttgttacttttggcacatttaatt |
34971976 |
T |
|
| Q |
223 |
gttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttagga |
322 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||| || |||| ||||||| ||||| | | ||||| | |
|
|
| T |
34971977 |
gttgcttggacatgagaaacatcttttgcagttataattgccaaaggctttggggttgttgttgctttaaatatcttgtttagtattcttacatttagta |
34972076 |
T |
|
| Q |
323 |
tgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagag |
367 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34972077 |
tggctgagaatgaggt-attgtttggtgtgtaaatgacttcagag |
34972120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 36090464 - 36090893
Alignment:
| Q |
20 |
ttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtc |
119 |
Q |
| |
|
||||||| ||||||||||||||||| | | ||||||| |||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||| ||| |
|
|
| T |
36090464 |
ttgcaatcgtataataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttctaaattgacatcaattgaattgagatgaagcaagtc |
36090563 |
T |
|
| Q |
120 |
aattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattta |
219 |
Q |
| |
|
|||||||||| ||| | |||||| | | || || |||||||| || || ||||||||||||||||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
36090564 |
aattataacataaggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttgttacttttagcacattta |
36090663 |
T |
|
| Q |
220 |
attgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtg-ttgtttttgtttcaaatctcttgttatgtattttcatgttt |
318 |
Q |
| |
|
| |||| |||||||||| ||| ||| ||| | ||||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
36090664 |
actgttacttggacatgggaactatcctttactgttataattgccaaaggttttagtgtttgttgctgttttgaatctcttgtaatgtattttcatgttg |
36090763 |
T |
|
| Q |
319 |
aggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtt---------tgagaaaaacaattgagaaaagtt |
409 |
Q |
| |
|
| |||| || ||||||||||| |||||| | |||||||||| ||||| | | ||||||| ||| | |||||||||||| |||||||| || |
|
|
| T |
36090764 |
aagatggttaagaatgaggtg-ttgttttgagtgtaaatgatgtcagaaacatgggaattcaaagattgagaataatgagaaaaacaagtgagaaaattt |
36090862 |
T |
|
| Q |
410 |
tgaatggatgattgtgatgttgttgttgaaa |
440 |
Q |
| |
|
| ||||| ||||||||||||||||| |||| |
|
|
| T |
36090863 |
taaatgggagattgtgatgttgttgtagaaa |
36090893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 34972148 - 34972199
Alignment:
| Q |
386 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttg |
437 |
Q |
| |
|
||||||||||| || |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
34972148 |
tgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 36100240 - 36100190
Alignment:
| Q |
390 |
aaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaa |
440 |
Q |
| |
|
||||||||||||||| | ||||||||| |||| |||||||||||||||||| |
|
|
| T |
36100240 |
aaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaa |
36100190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 6838634 - 6838271
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| |||||| |||||||| |||| || | |
|
|
| T |
6838634 |
ctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaacatg |
6838535 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||| ||||||| ||| ||||||||| | || || | ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6838534 |
tcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttgttgcttttggcacatt |
6838435 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
||| |||| |||||||||||||| |||||||| ||||||||||||||||||| || ||||||||| ||||| ||||||||| || |||||||| ||||| |
|
|
| T |
6838434 |
taactgtttcttggacatgagaatcatcttttacagttataattgccaaaggcttcggtgttgttgctgttttaaatctcttattttgtatttttatgtt |
6838335 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaa |
382 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| | |||||||||| | |||||| |||| |
|
|
| T |
6838334 |
gaggatagttgagaatgaggtg-ttgtttggtgtgtaagtaacttcagagacaagggaatgtgaa |
6838271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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