View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_high_10 (Length: 319)
Name: NF11468_high_10
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_high_10 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 18026211 - 18026508
Alignment:
| Q |
18 |
aaaacatccataaatctagtccttggtatgnnnnnnnnn-gtaaatattactgtatgacagtgtgtacctggcaaaaattcccaaataagatagccaagt |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18026211 |
aaaacatccataaatctagtccttggtatgttttttttttgtaaatattactgtatgacagtgtgtacctggcaaaaattcccaaataagagagccaagt |
18026310 |
T |
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| Q |
117 |
acgtcatattctctcattgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18026311 |
acgtcatattctctcattgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctga |
18026410 |
T |
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| Q |
217 |
ggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18026411 |
ggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttct |
18026508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 315
Target Start/End: Original strand, 27392092 - 27392275
Alignment:
| Q |
132 |
attgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttga |
231 |
Q |
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|||||||| ||||||||||||||| |||||| | ||||| |||||| | || |||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27392092 |
attgctgaagtcagagagagttctcgacaactttgtataaaacgatatggtgctgcttgaaaatgaattccttgggtctggctgaggcttggtaggttga |
27392191 |
T |
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| Q |
232 |
gaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagcttctctgcttctc |
315 |
Q |
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| T |
27392192 |
caaatgctacaaatttcagatttggaatattgactttctcatcaacttcgcatacaaatatttcctctagctcatctgcttctc |
27392275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 141 - 303
Target Start/End: Complemental strand, 12146413 - 12146248
Alignment:
| Q |
141 |
gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta |
240 |
Q |
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||||||||||||||||||||| | | ||| |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| |||||||| |
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| T |
12146413 |
gtcagagagagttcttgacaattttggataatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgcta |
12146314 |
T |
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| Q |
241 |
catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagct |
303 |
Q |
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|| || ||| |||||||||||||||| || |||| ||||||||||||||||||||||||||| |
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| T |
12146313 |
caaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagct |
12146248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 298
Target Start/End: Complemental strand, 27347800 - 27347643
Alignment:
| Q |
141 |
gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta |
240 |
Q |
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||||||||||||||||||||| | | | | |||||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||| ||||||| |
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| T |
27347800 |
gtcagagagagttcttgacaattttggacaatacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttgacaaatgctg |
27347701 |
T |
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| Q |
241 |
catatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctc |
298 |
Q |
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|| || |||| |||||||||||||||| || |||| ||| |||||||||||||||||| |
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| T |
27347700 |
caaatttcagttttggaatattgactttctcatcacctttacatacaaatatttcctc |
27347643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 27376564 - 27376420
Alignment:
| Q |
173 |
acgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctga |
272 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| |||||||||| | | |||||||| |||||||||| || | |
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| T |
27376564 |
acgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctacaagttttagatttggcatattgactttctca |
27376465 |
T |
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| Q |
273 |
tca---acttcacatacaaatatttcctctagcttctctgcttct |
314 |
Q |
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||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
27376464 |
tcaccttcttcacatacaaatatttcctctagcttatctgattct |
27376420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 17746113 - 17746200
Alignment:
| Q |
216 |
aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagct |
303 |
Q |
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|||||||||||||||| |||||| ||| | |||| || ||||||||||||| || |||| |||||| | |||||||||||||||||| |
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| T |
17746113 |
aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagct |
17746200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 19047433 - 19047520
Alignment:
| Q |
216 |
aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagct |
303 |
Q |
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|||||||||||||||| |||||| ||| | |||| || ||||||||||||| || |||| |||||| | |||||||||||||||||| |
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| T |
19047433 |
aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagct |
19047520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 26142185 - 26142257
Alignment:
| Q |
187 |
cctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaat |
259 |
Q |
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||||||||||||||| |||| |||| ||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26142185 |
cctgaaaatgaattccctgggcatggcagagccttggtaggttgacaaatgctacaactctcagatttggaat |
26142257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 54589 - 54754
Alignment:
| Q |
141 |
gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta |
240 |
Q |
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||||||||||||||||||||| | | | | ||||||||||||| |||||||||||||||| |||||||||| ||||||||| |||||| |||||||| |
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| T |
54589 |
gtcagagagagttcttgacaattttggacaaaacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttggtaaatgcta |
54688 |
T |
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| Q |
241 |
catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagct |
303 |
Q |
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|| | |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
54689 |
caactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagct |
54754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 313
Target Start/End: Complemental strand, 22391483 - 22391343
Alignment:
| Q |
176 |
attttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatca |
275 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||| | | |||||||| |||||||||| ||||||| |
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| T |
22391483 |
attttgtacagcctgaaaatgaatttcttgggtctgatagaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatca |
22391384 |
T |
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| Q |
276 |
---acttcacatacaaatatttcctctagcttctctgcttc |
313 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||| |
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| T |
22391383 |
ccttcttcacatacaaatatttcctctagcttatatgcttc |
22391343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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