View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11468_high_15 (Length: 248)

Name: NF11468_high_15
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11468_high_15
NF11468_high_15
[»] chr4 (7 HSPs)
chr4 (1-229)||(5089837-5090065)
chr4 (82-222)||(18654367-18654507)
chr4 (82-222)||(18688516-18688656)
chr4 (82-222)||(18722975-18723115)
chr4 (166-227)||(18678445-18678506)
chr4 (166-222)||(18698290-18698346)
chr4 (166-222)||(18730394-18730450)
[»] chr6 (42 HSPs)
chr6 (67-229)||(28186527-28186689)
chr6 (2-222)||(28140603-28140823)
chr6 (2-230)||(28326546-28326774)
chr6 (2-230)||(28504182-28504410)
chr6 (160-228)||(28296628-28296696)
chr6 (160-228)||(28515377-28515445)
chr6 (1-110)||(28235632-28235741)
chr6 (16-222)||(27676514-27676720)
chr6 (2-221)||(28243863-28244082)
chr6 (166-220)||(25075099-25075153)
chr6 (16-222)||(27591915-27592121)
chr6 (145-222)||(26636857-26636934)
chr6 (145-222)||(26742823-26742900)
chr6 (1-222)||(26950810-26951031)
chr6 (166-222)||(26849944-26850000)
chr6 (1-227)||(28182185-28182411)
chr6 (169-222)||(26938264-26938317)
chr6 (145-218)||(26960336-26960409)
chr6 (134-222)||(26624471-26624559)
chr6 (134-222)||(26730448-26730536)
chr6 (166-222)||(27664108-27664164)
chr6 (79-222)||(26824964-26825107)
chr6 (161-219)||(28240584-28240642)
chr6 (2-115)||(26938097-26938210)
chr6 (57-222)||(27680073-27680238)
chr6 (1-110)||(28228019-28228128)
chr6 (1-222)||(31285626-31285847)
chr6 (170-222)||(26812764-26812816)
chr6 (1-229)||(29827053-29827281)
chr6 (2-229)||(28097330-28097557)
chr6 (99-229)||(29842879-29843009)
chr6 (70-179)||(26144004-26144113)
chr6 (166-222)||(26978612-26978668)
chr6 (82-218)||(27705152-27705288)
chr6 (131-182)||(25512088-25512139)
chr6 (131-182)||(26057119-26057170)
chr6 (131-182)||(26077089-26077140)
chr6 (131-222)||(28787435-28787526)
chr6 (70-179)||(25484195-25484304)
chr6 (1-117)||(26862647-26862763)
chr6 (134-222)||(26885267-26885355)
chr6 (166-222)||(28793591-28793647)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-229)||(57181-57409)
[»] chr5 (1 HSPs)
chr5 (1-229)||(16691934-16692162)
[»] chr2 (4 HSPs)
chr2 (1-222)||(17992109-17992330)
chr2 (1-228)||(3280726-3280953)
chr2 (164-197)||(17662501-17662534)
chr2 (164-197)||(17713527-17713560)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-110)||(35794-35903)
scaffold0038 (2-221)||(44025-44244)
scaffold0038 (161-219)||(40746-40804)
scaffold0038 (1-110)||(28517-28626)
[»] chr1 (2 HSPs)
chr1 (1-222)||(26136955-26137176)
chr1 (164-222)||(267234-267292)
[»] chr8 (2 HSPs)
chr8 (165-228)||(31906285-31906348)
chr8 (166-222)||(29272732-29272788)
[»] scaffold1870 (1 HSPs)
scaffold1870 (166-222)||(1-57)
[»] scaffold0419 (1 HSPs)
scaffold0419 (166-222)||(8719-8775)
[»] scaffold0277 (3 HSPs)
scaffold0277 (166-222)||(3606-3662)
scaffold0277 (1-41)||(3787-3827)
scaffold0277 (166-222)||(12569-12625)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5090065 - 5089837
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5090065 attaccactcgagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattattaaggt 5089966  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5089965 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 5089866  T
Q  201 gggttccaatttgtttggaaaggatatag 229  Q
    |||||||||||||||||||||||||||||    
T  5089865 gggttccaatttgtttggaaaggatatag 5089837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 18654507 - 18654367
Alignment:
Q  82 gctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttc 181  Q
    |||||| ||||||| ||||||| ||||||||||| |   |  |||  | ||||||||||||  |||||||||||||  ||  | ||||||||||||||||    
T  18654507 gctcttgaattgttgaggtggatggcttttaaaatttacaaagttccttcaagttatgaagagattttaaaccgtgcagttgcgtatgcttctggccttc 18654408  T
Q  182 cattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||| ||| ||||||| ||||||||||| ||||||||||||    
T  18654407 cattagctatagaagtcgtgggttccaacttgtttggaaag 18654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 18688656 - 18688516
Alignment:
Q  82 gctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttc 181  Q
    |||||| ||||||| ||||||| ||||||||||| |  ||  |||  | ||||||||||||  |||||||||||||  ||    ||||||||||||||||    
T  18688656 gctcttgaattgttgaggtggatggcttttaaaagttataaagttccttcaagttatgaagagattttaaaccgtgcagtcgtgtatgcttctggccttc 18688557  T
Q  182 cattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||| ||| ||||||| ||||||||||| ||||||||||||    
T  18688556 cattagctatagaagtagtgggttccaacttgtttggaaag 18688516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 18723115 - 18722975
Alignment:
Q  82 gctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttc 181  Q
    |||||| ||||||| ||||||| ||||||||||| |   |  |||  | ||||||||||||  ||||||||||| |  ||  | ||||||||||||||||    
T  18723115 gctcttgaattgttgaggtggatggcttttaaaagttacaaagttccttcaagttatgaagagattttaaaccgagcagttgcgtatgcttctggccttc 18723016  T
Q  182 cattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||| ||| ||||||| ||||||||||| ||||||||||||    
T  18723015 cattagctatagaagtagtgggttccaacttgtttggaaag 18722975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 18678506 - 18678445
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatat 227  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||| ||||    
T  18678506 tatgcttctggccttccattagctatagaagtagtgggttccaacttgtttggaaagaatat 18678445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 18698346 - 18698290
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||    
T  18698346 tatgcttctggccttccattagctctagaagtagtgggttccaacttgtttggaaag 18698290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 18730450 - 18730394
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||    
T  18730450 tatgcttctggccttccattagctctagaagtagtgggttccaacttgtttggaaag 18730394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 28186527 - 28186689
Alignment:
Q  67 ttaaatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaactt 166  Q
    ||||||||||| ||||||||| ||||||| | |||||||||||| |||||||  |  ||| || ||| ||  ||  |  ||||| ||| ||  |||||||    
T  28186527 ttaaatgagaaagaagctcttgaattgttgacgtggaaggctttaaaaaataacaaagttgatacaaatttcgacagcgttttacaccatgcagtaactt 28186626  T
Q  167 atgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatag 229  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  28186627 atgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatag 28186689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 28140603 - 28140823
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    |||| |||| ||||||||| ||||||  ||||||||||||||| | ||| || ||| ||||||| |||||| || | ||||||||  | ||| | |  ||    
T  28140603 ttacaactcgagacaaacatttgctagcatgtcatgggattgagagaacttatgaactagatgggttaaataaggaagaagctctagagttgctgaaatg 28140702  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||||| |||||||||| ||  ||| || ||||||||||    |||||||||||||  || |||||||| |||||||||||||||||||||||||| ||     
T  28140703 gaaggcatttaaaaataataaagttgattcaagttatgagcacattttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagtt 28140802  T
Q  202 ggttccaatttgtttggaaag 222  Q
    ||||| |  ||||||||||||    
T  28140803 ggttctagcttgtttggaaag 28140823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 28326546 - 28326774
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||||||||| ||||||||| |||| |||||||| | | |||| ||| |   |   |||| | |||  ||||||||| ||||||| |||||    
T  28326546 ttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagctcttgaattgttgaggtg 28326645  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||  |||| |||||||  |  ||  || ||| || ||| || |||||| || |||  |||||||||||||||||||||||||||||||||||||| |||    
T  28326646 gaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccattggctttagaagtagtg 28326745  T
Q  202 ggttccaatttgtttggaaaggatatagt 230  Q
    |||||||| |||||||||||| |||||||    
T  28326746 ggttccaacttgtttggaaagaatatagt 28326774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 28504182 - 28504410
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||||||||| ||||||||| |||| |||||||| | | |||| ||| |   |   |||| | |||  ||||||||| ||||||| |||||    
T  28504182 ttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagctcttgaattgttgaggtg 28504281  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||  |||| |||||||  |  ||  || ||| || ||| || |||||| || |||  |||||||||||||||||||||||||||||||||||||| |||    
T  28504282 gaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccattggctttagaagtagtg 28504381  T
Q  202 ggttccaatttgtttggaaaggatatagt 230  Q
    |||||||| |||||||||||| |||||||    
T  28504382 ggttccaacttgtttggaaagaatatagt 28504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 28296696 - 28296628
Alignment:
Q  160 gtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatata 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  28296696 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatata 28296628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 28515377 - 28515445
Alignment:
Q  160 gtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatata 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  28515377 gtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatata 28515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28235632 - 28235741
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||||||||| ||||||  | ||||||||||||| | ||| |||||| |||||   ||||||||||||||||||||| ||||||| ||||    
T  28235632 attaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgagaacgaagctcttgaattgttgaggt 28235731  T
Q  101 ggaaggcttt 110  Q
    ||||||||||    
T  28235732 ggaaggcttt 28235741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 27676720 - 27676514
Alignment:
Q  16 aaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaa 115  Q
    |||||||| ||| | ||||||||||| || | |||||| | |||||| |  || |||||||  ||||||||| ||||||| |||||||||||||||||||    
T  27676720 aaacacttactagactgtcatgggatagaaaaaacatatgcagtagaagagttgaatgagacagaagctcttgaattgttgaggtggaaggcttttaaaa 27676621  T
Q  116 atagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtt 215  Q
    ||   |  |||  | ||||||||||||  |||||||| ||||  ||    |||||||||||||||||||| ||  ||||||| |||||||| || |||||    
T  27676620 atgagaaagttccttcaagttatgaagacattttaaagcgtgcagttgtatatgcttctggccttccattagcgatagaagtagtgggttctaacttgtt 27676521  T
Q  216 tggaaag 222  Q
    |||||||    
T  27676520 tggaaag 27676514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 28243863 - 28244082
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||||| ||| ||||||||| ||||||||||||| | | |||| ||| ||  |   |||||||||| |||||||||| ||||||| |||||    
T  28243863 ttaccactcgagacagacatttgctaaaaagtcatgggattgaaagagcatatgaattacctaagttaaatgagaccgaagctcttgaattgttgaggtg 28243962  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||  |||| |||||||  |  ||  || ||| ||  || ||  |||||    |||  |||||||||||||||||||||||||||||||||||||| |||    
T  28243963 gaattctttcaaaaataacaaggtggattcaaatttcgatggtgttttacggtgtgcagtaacttatgcttctggccttccattggctttagaagtagtg 28244062  T
Q  202 ggttccaatttgtttggaaa 221  Q
    ||||| || || ||||||||    
T  28244063 ggttcaaacttatttggaaa 28244082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 25075099 - 25075153
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaa 220  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  25075099 tatgcttctggccttccattagctttagaagttgtgggttccaacttgtttggaa 25075153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 27592121 - 27591915
Alignment:
Q  16 aaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaa 115  Q
    |||||||| ||| | ||||||||||| || | |||||| | |||||| |  || |||| ||  ||||||||| ||||||| |||||||||||||||||||    
T  27592121 aaacacttactagactgtcatgggatagaaaaaacatatgcagtagaagagttgaatgggacagaagctcttgaattgttgaggtggaaggcttttaaaa 27592022  T
Q  116 atagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtt 215  Q
    ||   |  |||  | ||||||||||||  |||||||| ||||  ||    |||||||||||||||||||| ||  ||||||| |||||||| || |||||    
T  27592021 atgagaaagttccttcaagttatgaagacattttaaagcgtgcagttgtatatgcttctggccttccattagcgatagaagtagtgggttctaacttgtt 27591922  T
Q  216 tggaaag 222  Q
    |||||||    
T  27591921 tggaaag 27591915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 26636857 - 26636934
Alignment:
Q  145 attttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||  || |  |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26636857 attttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaag 26636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 26742823 - 26742900
Alignment:
Q  145 attttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||  || |  |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26742823 attttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaag 26742900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26950810 - 26951031
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    ||||||||||  |||||||| ||| ||  ||||||||||||| | | || ||| |||| ||||||||||||| || |  |||||||| ||||||||||      
T  26950810 attaccactcgtgacaaacatttgttatcatgtcatgggattaaaaaaatatatgaagcagatggtttaaataaggaacaagctcttgaattgttaagaa 26950909  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
     || ||||||||||| ||  |    | || |||| |||||  | |||||||||||||  || |  |||||| ||||||||||||| ||||||||||| ||    
T  26950910 tgatggcttttaaaagtaacaaaaatgattcaaggtatgatagtattttaaaccgtgcagttaaatatgctgctggccttccattagctttagaagtagt 26951009  T
Q  201 gggttccaatttgtttggaaag 222  Q
    |||||| || ||||||||||||    
T  26951010 gggttctaacttgtttggaaag 26951031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 26849944 - 26850000
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26849944 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaag 26850000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28182185 - 28182411
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| |||| |||| ||||||  | ||||||||||||| | | |||| ||| |||||   ||||||||||| ||||||||| ||||||| ||||    
T  28182185 attaccactcgagacgaacaattgctagtaggtcatgggattgaaagagcatatgaaatagataagttaaatgagaaagaagctcttgaattgttgaggt 28182284  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    ||   ||||| |||| ||  |  ||| || | | || ||| |  |||||| |||  |  ||||||| ||| || | ||||||||||||||||||||| ||    
T  28182285 ggtctgctttcaaaattaacaaagttgatgcgaattttgacgtcattttacaccaagcagtaacttttgcatcagtccttccattggctttagaagtagt 28182384  T
Q  201 gggttccaatttgtttggaaaggatat 227  Q
    ||||||||| |||||||||||| ||||    
T  28182385 gggttccaacttgtttggaaagaatat 28182411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 26938264 - 26938317
Alignment:
Q  169 gcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  26938264 gcttctggccttccattagctttagaagttgtaggttcccatttgtttggaaag 26938317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 26960336 - 26960409
Alignment:
Q  145 attttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttgg 218  Q
    |||||||||||||  || |  |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  26960336 attttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttgg 26960409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 26624471 - 26624559
Alignment:
Q  134 gttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||  |||||||||||||  ||  | ||||||||||||||||| || | ||||||| ||||||||||||| ||||||||||||    
T  26624471 gttatgaagacattttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaag 26624559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 26730448 - 26730536
Alignment:
Q  134 gttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||  |||||||||||||  ||  | ||||||||||||||||| || | ||||||| ||||||||||||| ||||||||||||    
T  26730448 gttatgaagacattttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaag 26730536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 27664164 - 27664108
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  27664164 tatgcttctggccttccattagctttaaaagtagtgggttccaacttgtttggaaag 27664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 26824964 - 26825107
Alignment:
Q  79 gaagctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggcc 178  Q
    ||||||||| ||||||||||||||| ||||||||||||||  |  ||     |||||||||||   |||||||||||||  ||  | |||||||| ||||    
T  26824964 gaagctcttgaattgttaaggtggatggcttttaaaaataacaaagtaccgtcaagttatgaacacattttaaaccgtgcagtttcatatgcttcgggcc 26825063  T
Q  179 ttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||| || |  |||||| | ||||||||||||||||||||||||    
T  26825064 ttcccttagtattagaaatagtgggttccaatttgtttggaaag 26825107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 28240584 - 28240642
Alignment:
Q  161 taacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttgga 219  Q
    ||||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||||    
T  28240584 taacttatgcttctggcctaccattagctttagaagtagttggttccaacttgtttgga 28240642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 26938097 - 26938210
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||||||||| ||||||  ||||||||||||||| | || ||| | ||||||||| ||||| ||| | ||||||||| || | || |||||    
T  26938097 ttaccactcgagacaaacatttgctatcatgtcatgggattgaaagaatatatgtagtagatggcttaaaggaggaagaagctcttgaactatttaggtg 26938196  T
Q  102 gaaggcttttaaaa 115  Q
    || |||||| ||||    
T  26938197 gatggctttcaaaa 26938210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 27680073 - 27680238
Alignment:
Q  57 agtagatggtttaaatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgt 156  Q
    |||||| || || |||||||  ||||||||| ||||||| ||||||| ||||||||||| |  ||  |||  | || |||| ||||  ||||||||||||    
T  27680073 agtagaagggttgaatgagacagaagctcttgaattgttgaggtggatggcttttaaaagtgataaagttccttcaggttacgaagacattttaaaccgt 27680172  T
Q  157 gtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |  ||  | ||||||| ||||||||| || | ||||||||| |||||||| || ||||||||||||    
T  27680173 gcagttgcatatgcttttggccttccgttagttttagaagtagtgggttctaacttgtttggaaag 27680238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28228019 - 28228128
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| | ||||||| ||||||  | ||||||||||||| | | |||| ||| |||||   ||||||||||||||||||||| ||||| | ||||    
T  28228019 attaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgagaacgaagctcttgaattgatgaggt 28228118  T
Q  101 ggaaggcttt 110  Q
    |||| |||||    
T  28228119 ggaacgcttt 28228128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31285626 - 31285847
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| |||||||||||| ||||   ||||||||||  | |  ||| | | |||||| || || |||| ||  ||||||||| ||||||||||||    
T  31285626 attaccactcgagacaaacacttactaagtagtcatgggataaaaagtacacatgcagtagaagggttgaatgggactgaagctcttgaattgttaaggt 31285725  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    ||| ||||||||||| |   |  |||  | || |||| ||||  |||||||||||||  ||  | ||| |||||||||||||||| | | ||||||| ||    
T  31285726 ggatggcttttaaaagtgacaaagttccttcaggttacgaagacattttaaaccgtgcagttgcatattcttctggccttccattagttatagaagtagt 31285825  T
Q  201 gggttccaatttgtttggaaag 222  Q
    |||||| || ||||||||||||    
T  31285826 gggttcaaacttgtttggaaag 31285847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 26812764 - 26812816
Alignment:
Q  170 cttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||    
T  26812764 cttctggccttccattagctatagaagtagtgggttccaacttgtttggaaag 26812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29827053 - 29827281
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| |||| |||| ||||||| | ||||||||||| ||| || |||  |||||||||   |||||  ||  ||| | ||| |||| || ||||    
T  29827053 attaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggt 29827152  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    |||| ||||||||| ||||||  | | || |||| ||||| |  |||||| ||||||   || ||||||||||||||||||| |||| ||||||| | ||    
T  29827153 ggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagt 29827252  T
Q  201 gggttccaatttgtttggaaaggatatag 229  Q
     ||| ||   |||||||||||| ||||||    
T  29827253 aggtcccgcgttgtttggaaagaatatag 29827281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 28097557 - 28097330
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||| ||| ||||||||  | |||||||||||||  ||||||| |||  | | |  |||||  |||| ||||| ||| ||||| | |||||    
T  28097557 ttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcccttgaattgcttaggtg 28097458  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||||||||||||  ||     ||| || ||||||||||  | |||||||||||||   ||| ||||||| |||||||||||||||| || ||| |  |     
T  28097457 gaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatatta 28097358  T
Q  202 ggttccaatttgtttggaaaggatatag 229  Q
    |||||||| |||| ||||||| ||||||    
T  28097357 ggttccaacttgtatggaaagcatatag 28097330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 29843009 - 29842879
Alignment:
Q  99 gtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagtt 198  Q
    |||||| ||||||||||||||||  ||| || |||| ||||| |  |||||| ||||||   || ||||||||||||||||||| |||| ||||||| |     
T  29843009 gtggaaagcttttaaaaatagtatagttgattcaagctatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaatta 29842910  T
Q  199 gtgggttccaatttgtttggaaaggatatag 229  Q
    || ||| |   ||||||||||||| ||||||    
T  29842909 gtaggtccagctttgtttggaaagaatatag 29842879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 26144004 - 26144113
Alignment:
Q  70 aatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatg 169  Q
    |||||||  ||||||||| ||||||| ||| | | |||||||||||||   |  |||  | |||||||||||| ||||||||||||||| || |||||||    
T  26144004 aatgagacagaagctcttgaattgttgaggcgaatggcttttaaaaatgacaaagttccttcaagttatgaagaaattttaaaccgtgtagttacttatg 26144103  T
Q  170 cttctggcct 179  Q
    | ||||||||    
T  26144104 catctggcct 26144113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 26978612 - 26978668
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |  ||||||||||||    
T  26978612 tatgcttctggtcttccattagctttagaagtagtgggttcaagcttgtttggaaag 26978668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 27705288 - 27705152
Alignment:
Q  82 gctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttc 181  Q
    |||||| ||||||| ||||||| |||||||||||||   |  |||  | || |||||||||  |||||||||||||  ||  | ||||||||||||||||    
T  27705288 gctcttgaattgttgaggtggatggcttttaaaaatgacaacgttccttcaggttatgaagacattttaaaccgtgcagttgcatatgcttctggccttc 27705189  T
Q  182 cattggctttagaagttgtgggttccaatttgtttgg 218  Q
    | || | |||||||||  ||||||| || ||||||||    
T  27705188 cgttagttttagaagtaatgggttctaacttgtttgg 27705152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 25512088 - 25512139
Alignment:
Q  131 caagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttcc 182  Q
    ||||||||||||  |||||||||||||| || |||||||| |||||||||||    
T  25512088 caagttatgaagagattttaaaccgtgtagttacttatgcatctggccttcc 25512139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 26057119 - 26057170
Alignment:
Q  131 caagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttcc 182  Q
    ||||||||||||  |||||||||||||| || |||||||| |||||||||||    
T  26057119 caagttatgaagatattttaaaccgtgtagttacttatgcatctggccttcc 26057170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 26077089 - 26077140
Alignment:
Q  131 caagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttcc 182  Q
    ||||||||||||  |||||||||||||| || |||||||| |||||||||||    
T  26077089 caagttatgaagatattttaaaccgtgtagttacttatgcatctggccttcc 26077140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 28787435 - 28787526
Alignment:
Q  131 caagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    ||||||||||||   ||||||| ||||  ||  |||||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  28787435 caagttatgaagacgttttaaatcgtgcagtttcttatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 28787526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 25484195 - 25484304
Alignment:
Q  70 aatgagaacgaagctcttcaattgttaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatg 169  Q
    |||||||  ||||||||| ||||||| ||| | | |||||||||||||   |  |||  | ||||||||||||  |||||||||||||| || |||||||    
T  25484195 aatgagacagaagctcttgaattgttgaggcgaatggcttttaaaaatgacaaagttccttcaagttatgaagagattttaaaccgtgtagttacttatg 25484294  T
Q  170 cttctggcct 179  Q
    | ||||||||    
T  25484295 catctggcct 25484304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26862647 - 26862763
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||| |||||||| |||| ||| |||||||| || | |||||| |  ||| | ||  || ||||||  |||||| || ||||||| ||||    
T  26862647 attaccactcgagataaacacttactaacatgccatgggatagaaagaacatatgcggtaaacgggctacatgagacagaagcttttgaattgttgaggt 26862746  T
Q  101 ggaaggcttttaaaaat 117  Q
    ||| |||||||||||||    
T  26862747 ggatggcttttaaaaat 26862763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 26885267 - 26885355
Alignment:
Q  134 gttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||||  |||||||||||||  ||  | |||||||| |||||||| || | | ||||| | ||||||||||| ||||||||||||    
T  26885267 gttatgaagagattttaaaccgtgcagtttcatatgcttcgggccttcctttagttatagaaatagtgggttccaacttgtttggaaag 26885355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 28793591 - 28793647
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  28793591 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 28793647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 57409 - 57181
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| |||| |||| ||||||  | ||||||||||||| | | |||| ||| |||||   ||||||||||| ||||||||| ||||||| ||||    
T  57409 attaccactcgagacgaacaattgctagcaggtcatgggattgaaagagcatatgaaatagataagttaaatgagaaagaagctcttgaattgttgaggt 57310  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    |||| ||||| |||||||  |  || ||||||| ||  ||     ||||| ||| ||  |||||||||||||| |||||||||||||| |||||||| ||    
T  57309 ggaatgctttcaaaaataacaaagtcaatccaaatttcgacaacgttttacaccttgcagtaacttatgcttcaggccttccattggccttagaagtagt 57210  T
Q  201 gggttccaatttgtttggaaaggatatag 229  Q
    |||||| || |||||||||||| ||||||    
T  57209 gggttcgaacttgtttggaaagaatatag 57181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16691934 - 16692162
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaat-gagaacgaagctcttcaattgttaagg 99  Q
    |||||||||| |||||||||||| |||| | ||||||| ||||||| || ||| ||||| |||||||||||| ||||| ||||||||  || | || |||    
T  16691934 attaccactcgagacaaacacttactaacaagtcatggtattgatagaatatatgaagtggatggtttaaatggagaa-gaagctctagaactattgagg 16692032  T
Q  100 tggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttg 199  Q
    |||||| ||||||||||||  |  ||  || ||||||  ||    ||||||||   ||| |||||||||||||||||||||||||| ||||||||||| |    
T  16692033 tggaagacttttaaaaataacaaagtcgattcaagtttcgagtacattttaaaatatgttgtaacttatgcttctggccttccattagctttagaagtag 16692132  T
Q  200 tgggttccaatttgtttggaaaggatatag 229  Q
    | || || || |||||||||||| ||||||    
T  16692133 taggatctaacttgtttggaaagaatatag 16692162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17992330 - 17992109
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||||||||| ||| ||| ||||||||||||| | | || ||| ||||||||||| ||||||||| | ||||||||| || |||||||||    
T  17992330 attaccactcgagacaaacatttgttaacatgtcatgggattaaaacaatatatgaagtagatggattaaatgaggaagaagctcttgaactgttaaggt 17992231  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    ||||||| ||||||   |      || || | |||||| |    |||||||||||||| || |  |||||| ||||||| ||||| ||||||||||| ||    
T  17992230 ggaaggcatttaaaggcaacgaaattgattctagttataactatattttaaaccgtgtagttaaatatgctgctggcctcccattagctttagaagtagt 17992131  T
Q  201 gggttccaatttgtttggaaag 222  Q
    ||||||||| ||||||||||||    
T  17992130 gggttccaacttgtttggaaag 17992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3280726 - 3280953
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||||||||||||| ||  | |||||||||||||  ||||||| ||| ||||||  |||||| || | ||||| ||| ||||| | |  |    
T  3280726 attaccactcgagacaaacacttgttatcaagtcatgggattgaactaacatatgaaatagatgagttaaataaggaagaagcacttgaattgcttacat 3280825  T
Q  101 ggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgt 200  Q
    ||||||||||||||| ||     |||||| ||||||||||     || ||||||| |  |||| |||||||||||||||||||||||| ||||||||  |    
T  3280826 ggaaggcttttaaaagtaagcaagttaattcaagttatgagcacgttctaaaccgcgcagtaaattatgcttctggccttccattggcattagaagtatt 3280925  T
Q  201 gggttccaatttgtttggaaaggatata 228  Q
     |||||||| |||||||||||| |||||    
T  3280926 aggttccaacttgtttggaaagaatata 3280953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 17662501 - 17662534
Alignment:
Q  164 cttatgcttctggccttccattggctttagaagt 197  Q
    |||||||||||||||||||||||||||| |||||    
T  17662501 cttatgcttctggccttccattggctttggaagt 17662534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 17713527 - 17713560
Alignment:
Q  164 cttatgcttctggccttccattggctttagaagt 197  Q
    |||||||||||||||||||||||||||| |||||    
T  17713527 cttatgcttctggccttccattggctttggaagt 17713560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35794 - 35903
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| ||||||||| ||||||  | ||||||||||||| | ||| |||||| |||||   ||||||||||||||||||||| ||||||| ||||    
T  35794 attaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgagaacgaagctcttgaattgttgaggt 35893  T
Q  101 ggaaggcttt 110  Q
    ||||||||||    
T  35894 ggaaggcttt 35903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 44025 - 44244
Alignment:
Q  2 ttaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggtg 101  Q
    ||||||||| ||||| ||| ||||||||| ||||||||||||| | | |||| ||| ||  |   |||||||||| |||||||||| ||||||| |||||    
T  44025 ttaccactcgagacagacatttgctaaaaagtcatgggattgaaagagcatatgaattacctaagttaaatgagaccgaagctcttgaattgttgaggtg 44124  T
Q  102 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 201  Q
    |||  |||| |||||||  |  ||  || ||| ||  || ||  |||||    |||  |||||||||||||||||||||||||||||||||||||| |||    
T  44125 gaattctttcaaaaataacaaggtggattcaaatttcgatggtgttttacggtgtgcagtaacttatgcttctggccttccattggctttagaagtagtg 44224  T
Q  202 ggttccaatttgtttggaaa 221  Q
    ||||| || || ||||||||    
T  44225 ggttcaaacttatttggaaa 44244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 40746 - 40804
Alignment:
Q  161 taacttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttgga 219  Q
    ||||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||||    
T  40746 taacttatgcttctggcctaccattagctttagaagtagttggttccaacttgtttgga 40804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28517 - 28626
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||||| | ||||||| ||||||  | ||||||||||||| | | |||| ||| |||||   ||||||||||||||||||||| ||||| | ||||    
T  28517 attaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgagaacgaagctcttgaattgatgaggt 28616  T
Q  101 ggaaggcttt 110  Q
    |||| |||||    
T  28617 ggaacgcttt 28626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26136955 - 26137176
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattgttaaggt 100  Q
    |||||||| | ||||||||| ||||||  ||||||||||||| | | || ||| ||||| |||   |||||| || | ||||||||| ||||||| ||||    
T  26136955 attaccacccgagacaaacatttgctatcatgtcatgggattaaaagaatatatgaagtcgatttcttaaataaggatgaagctcttgaattgtttaggt 26137054  T
Q  101 ggaaggcttttaaaaatagt-actgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttg 199  Q
    ||| ||||||||||| ||   ||  | | || |||||||||    ||||||||| |||  || |  ||||||||||||||||| || ||||||||||| |    
T  26137055 ggatggcttttaaaagtaaccacaatgactc-aagttatgattatattttaaacagtgcagttaaatatgcttctggccttccgttagctttagaagtag 26137153  T
Q  200 tgggttccaatttgtttggaaag 222  Q
    |||||||||  ||||||||||||    
T  26137154 tgggttccagcttgtttggaaag 26137176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 267292 - 267234
Alignment:
Q  164 cttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    ||||||||||||||||||| || | ||||||| |||||||||| || ||||||||||||    
T  267292 cttatgcttctggccttccgttagttttagaaattgtgggttctaacttgtttggaaag 267234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 31906285 - 31906348
Alignment:
Q  165 ttatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatata 228  Q
    |||||||||||| ||||||||||||||   |||| | ||||||||||| ||||||||| |||||    
T  31906285 ttatgcttctggacttccattggctttgatagttattggttccaatttatttggaaagaatata 31906348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 29272788 - 29272732
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  29272788 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 29272732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 1 - 57
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  1 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 8719 - 8775
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  8719 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 8775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 3662 - 3606
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  3662 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 3606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3827 - 3787
Alignment:
Q  1 attaccactctagacaaacacttgctaaaatgtcatgggat 41  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  3827 attaccactcgagacaaacacttgctaagaagtcatgggat 3787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12625 - 12569
Alignment:
Q  166 tatgcttctggccttccattggctttagaagttgtgggttccaatttgtttggaaag 222  Q
    |||||||| |||||||| || | ||||||| | ||||||||||| ||||||||||||    
T  12625 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaag 12569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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