View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_high_20 (Length: 218)
Name: NF11468_high_20
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 1330162 - 1330349
Alignment:
| Q |
12 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
111 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330162 |
ccagcagtaggagctgaaagcacccaccgacccacaaaaatctcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
1330261 |
T |
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| Q |
112 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacaccca |
199 |
Q |
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| T |
1330262 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacaccca |
1330349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 29083229 - 29083197
Alignment:
| Q |
128 |
aaggcatccttttgggttccaacaccattcata |
160 |
Q |
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| T |
29083229 |
aaggcattcttttgggttccaacaccattcata |
29083197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 14247373 - 14247562
Alignment:
| Q |
12 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-gaaaa |
110 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
14247373 |
ccagcagtaggagctgacagcacccacggacccacataaaactcctccatgacacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaa |
14247472 |
T |
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| Q |
111 |
aactccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccac |
200 |
Q |
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| T |
14247473 |
acctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaaacacgttggcactttagttctatccaacacccac |
14247562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 9850274 - 9850424
Alignment:
| Q |
13 |
cagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-gaaaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||| || |||| |||||||||||||| || | |||||| |||||| ||||||| ||| ||||||||| |||||| |
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| T |
9850274 |
cagcagtaggagctgacagcacccaccaacccacagaaaactcctccacggcatgtaacagcaatagcgctatcaatattcactgaaactcgaggaaaaa |
9850373 |
T |
|
| Q |
112 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcataga |
162 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
9850374 |
actccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 7701528 - 7701561
Alignment:
| Q |
136 |
cttttgggttccaacaccattcatagaataaaca |
169 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7701528 |
cttttgggttccaacatcattcatagaataaaca |
7701561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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