View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11468_high_7 (Length: 371)
Name: NF11468_high_7
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 44865071 - 44864762
Alignment:
| Q |
16 |
acattggaggaaatttcagcttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44865071 |
acattggaggaaatttcagcttactcgtgctgtgggcagactcccatgctagtatatattccatccatatgagttcttatgtccaagccttcaacatatg |
44864972 |
T |
|
| Q |
116 |
ccgcaccagatgttggctttgtcagaccaatcatctatgaacacacataagctgattagatttataaattaaggaggaaaaccattcaaaggatgaaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864971 |
ccgcaccagatgttggctttgtcagaccaatcatctatgaacacacataagctgattagatttataaattaaggaggaaaaccattcaaaggatgaaaca |
44864872 |
T |
|
| Q |
216 |
cgatttattgaatccccgtagaattccgtaacactaaagtgagcgtatcagaggtccatatatccttatgtgtatggaccaagcatcttttagaatacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864871 |
cgatttattgaatccccgtagaattccgtaacactaaagtgagcgtatcagaggtccatatatccttatgtgtatggaccaagcatcttttagaatacat |
44864772 |
T |
|
| Q |
316 |
gtaattttcc |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
44864771 |
gtaattttcc |
44864762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 44899777 - 44899566
Alignment:
| Q |
16 |
acattggaggaaatttcagcttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatg |
115 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
44899777 |
acattggagggaacttcagctcacttgtgctgtgggcatactcccatgctggtatatattccatccatgtgagttcttatgtccaggccttgaacatatg |
44899678 |
T |
|
| Q |
116 |
ccgcaccagatgttggctttgtcagaccaatcatctatgaacacacataagctgattagatttataaattaaggaggaaaaccattcaaaggatgaaaca |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
44899677 |
ccgcacccgatgttggctttgtgagaccaatcatctataagcacacataagctgattagatttataaattaagga-gaaaataattcaaaggacgaaaca |
44899579 |
T |
|
| Q |
216 |
cgatttattgaat |
228 |
Q |
| |
|
||||| |||||| |
|
|
| T |
44899578 |
tgatttgttgaat |
44899566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 44850939 - 44850767
Alignment:
| Q |
16 |
acattggaggaaatttcagcttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
44850939 |
acattggaggaaatttcagcttactcatgctgtgggcatactcccatgctagtatatattctgtccatatgagttcttacatccaggccttgaacatatg |
44850840 |
T |
|
| Q |
116 |
ccgcaccagatgttggctttgtcagaccaatcatctatgaacacacataagctgattagatttataaattaag |
188 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
44850839 |
ccgcaccagatgtcggctttgtcagaccaatcatctataagcacacataagcttattagatttataaattaag |
44850767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 44882951 - 44882742
Alignment:
| Q |
18 |
attggaggaaatttcagcttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatgcc |
117 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | | ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
44882951 |
attgtaggaaatttcagcttactcatgctgtgggcacactcccatgttagtatatattgctttcatatgagttcttatgtcctgaccttgaacatatgcc |
44882852 |
T |
|
| Q |
118 |
gcaccagatgttggctttgtcagaccaatcatctatgaacacacataagctgattagatttataaattaaggaggaaaaccattcaaaggatgaaacacg |
217 |
Q |
| |
|
|||||||||| ||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| | |
|
|
| T |
44882851 |
gcaccagatgatggttctgtgagaccaatcatctataagcacacataagctgattagatttataaattaaggagaaaaaaaattgaaaggatgaaacatg |
44882752 |
T |
|
| Q |
218 |
atttattgaa |
227 |
Q |
| |
|
||| |||||| |
|
|
| T |
44882751 |
attcattgaa |
44882742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 44839276 - 44839095
Alignment:
| Q |
35 |
cttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatgccgcaccagatgttggctt |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||| ||||||| ||||| |||||||||||| ||||||| |||||| |
|
|
| T |
44839276 |
cttactcgtgctgtgggcatactcccatgctagtatatattccgttcatatgagttccaatgtccaggccttgaacatatgccgcgccagatgctggctt |
44839177 |
T |
|
| Q |
135 |
tgtcagaccaatcatctatgaacacacataagctgattagatttataaattaaggaggaaaaccattcaaaggatgaaacacgatt |
220 |
Q |
| |
|
||| ||||||||||||||| | ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||| |
|
|
| T |
44839176 |
tgtgagaccaatcatctataagcacacataagctgattagatttataaattga----gaaaacaattcaaaggatgaaacatgatt |
44839095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 12925554 - 12925680
Alignment:
| Q |
25 |
gaaatttcagcttactcgtgctgtgggcagactcccatggtagtatatattccatccatatgagttcttatgtccaagccttcaacatatgccgcaccag |
124 |
Q |
| |
|
|||||| |||||||||||||||| ||||| || |||||| ||||||||||||| | ||||| ||||| |||||| | |||| ||||||||| | ||| | |
|
|
| T |
12925554 |
gaaattccagcttactcgtgctgagggcatacacccatgctagtatatattccgttcatatcagttcgtatgtcaagaccttgaacatatgctgtacctg |
12925653 |
T |
|
| Q |
125 |
atgttggctttgtcagaccaatcatct |
151 |
Q |
| |
|
| ||||||||||| ||||| ||||||| |
|
|
| T |
12925654 |
aggttggctttgtaagacctatcatct |
12925680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University