View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11468_low_1 (Length: 680)
Name: NF11468_low_1
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 638; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 30105734 - 30106391
Alignment:
| Q |
18 |
acaaccggagtagatttcttggtcaaggtggctatggcacggtgtacaaaggaatgttaccagatggaaccatagttgcagttaaaaagtcaaaagaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30105734 |
acaaccggagtagatttcttggtcaaggtggctatggcacggtgtacaaaggaatgttaccagatggaaccatagttgcagttaaaaagtcaaaagaact |
30105833 |
T |
|
| Q |
118 |
agaaaggaaccagatagagacttttgtcaatgaagtggtcatcttgtcacagatcaaccacaggaatattgtcaaactcttaggctgttgtcttgaaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30105834 |
agaaaggaaccagatagagacttttgtcaatgaagtggtcatcttgtcacagatcaaccacaggaatattgtcaaactcttaggctgttgtcttgaaaca |
30105933 |
T |
|
| Q |
218 |
gaaactccattactagtttatgaatttattcccaacggaactctttcccaacatatacatatgaaagaccaagagtcctccctttcatgggaaaaccgcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30105934 |
gaaactccattactagtttatgaatttattcccaacggaactctttcccaacatatacatatgaaagaccaagagtcctccctttcatgggaaaaccgcc |
30106033 |
T |
|
| Q |
318 |
taagaattgcatgtgaaattgctggagcagtggcatatatgcatttttcggcttctattccaatcttccacagagacataaaacccacaaacatactact |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30106034 |
taagaattgcatgtgaagttgctggagcagtggcatatatgcatttttcggcttctattccaatcttccacagagacataaaacccacaaacatactact |
30106133 |
T |
|
| Q |
418 |
agacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaaccacatttgtaggtggaacttacggg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30106134 |
agacagtaactttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaaccacatttgtaggtggaacttacggg |
30106233 |
T |
|
| Q |
518 |
tacatagaccctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggttgtgcttgtagagctcataaccggtagaaagc |
617 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30106234 |
tacatagatcctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggtcgtgcttgtagagctcataaccagtagaaagc |
30106333 |
T |
|
| Q |
618 |
ctatttcattctatgatgaagatgacggtcagaatttgattgcacatttcatctcagt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30106334 |
ctatttcattctatgatgaagatgacggtcagaatttgattgcacatttcatttcagt |
30106391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 26 - 675
Target Start/End: Original strand, 30115833 - 30116482
Alignment:
| Q |
26 |
agtagatttcttggtcaaggtggctatggcacggtgtacaaaggaatgttaccagatggaaccatagttgcagttaaaaagtcaaaagaactagaaagga |
125 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | || || || | |
|
|
| T |
30115833 |
agtaggtttcttggtcaaggcggctatggcacagtgtacaaaggaatgctaccagatggaaccatagtcgcagttaaaaagtcaaaacaccttgacagaa |
30115932 |
T |
|
| Q |
126 |
accagatagagacttttgtcaatgaagtggtcatcttgtcacagatcaaccacaggaatattgtcaaactcttaggctgttgtcttgaaacagaaactcc |
225 |
Q |
| |
|
|||| ||||| || |||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
30115933 |
accaaatagaaacgtttgtcaacgaagtagtcatcttatctcagatcaaccacaggaacattgtcaaacttttaggttgttgtcttgagacagaaactcc |
30116032 |
T |
|
| Q |
226 |
attactagtttatgaatttattcccaacggaactctttcccaacatatacatatgaaagaccaagagtcctccctttcatgggaaaaccgcctaagaatt |
325 |
Q |
| |
|
|||||| || ||||||| |||| || ||||||||||||||||||||| ||| |||||||| || || |||||||||||||||| ||||| |||||| |
|
|
| T |
30116033 |
attacttgtctatgaatacattcacagcggaactctttcccaacatatccatgggaaagaccgtgattcatccctttcatgggaaagtcgccttagaatt |
30116132 |
T |
|
| Q |
326 |
gcatgtgaaattgctggagcagtggcatatatgcatttttcggcttctattccaatcttccacagagacataaaacccacaaacatactactagacagta |
425 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| | |||||||| ||||||| || |
|
|
| T |
30116133 |
gcatgtgaggttgccggagcagtgacatatatgcatttctcagcttctattccaatcttccatagagacataaaaccaagtaacatactcctagacaata |
30116232 |
T |
|
| Q |
426 |
actttagtgccaaggtatctgattttgggacatcaagatcaataccactagataagactcacctaaccacatttgtaggtggaacttacgggtacataga |
525 |
Q |
| |
|
||| ||||||||| || ||||||||||| ||||| |||||||| ||| ||||||||||||| |||||||| ||||| || |||| |||||||| || |
|
|
| T |
30116233 |
actatagtgccaaagtgtctgattttggaacatctagatcaatcccattagataagactcatttaaccacagcagtaggaggtacttttgggtacatgga |
30116332 |
T |
|
| Q |
526 |
ccctgaatatttccagtccaatcaattcactaataagagtgatgtatacagtttcggggttgtgcttgtagagctcataaccggtagaaagcctatttca |
625 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||| || || |
|
|
| T |
30116333 |
tcctgaatattttcagtcaagtcaatttacagataagagtgatgtatatagtttcggcgtggtgcttgttgagcttataaccggtagaaagccaataaca |
30116432 |
T |
|
| Q |
626 |
ttctatgatgaagatgacggtcagaatttgattgcacatttcatctcagt |
675 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||| ||||||||||| ||||| |
|
|
| T |
30116433 |
ttcaatgatgaagatgagggtcagaatatgacggcacatttcatttcagt |
30116482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 30123010 - 30122946
Alignment:
| Q |
83 |
ggaaccatagttgcagttaaaaagtcaaaagaactagaaaggaaccagatagagacttttgtcaa |
147 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | || || |||||||| ||||| |||||||||| |
|
|
| T |
30123010 |
ggaaccataattgcagttaaaaagtcgaaacagcttgacaggaaccaaatagaagcttttgtcaa |
30122946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 40597778 - 40597860
Alignment:
| Q |
170 |
atcaaccacaggaatattgtcaaactcttaggctgttgtcttgaaacagaaactccattactagtttatgaatttattcccaa |
252 |
Q |
| |
|
|||||||| |||||| | || ||||| |||| |||||| | ||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
40597778 |
atcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaa |
40597860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 21428262 - 21428200
Alignment:
| Q |
50 |
tatggcacggtgtacaaaggaatgttaccagatggaaccatagttgcagttaaaaagtcaaaa |
112 |
Q |
| |
|
||||||| |||||||||||||| || || |||||||||||| | ||||||||||||||||| |
|
|
| T |
21428262 |
tatggcatggtgtacaaaggaacgtcgccggatggaaccataatcacagttaaaaagtcaaaa |
21428200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University