View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11468_low_11 (Length: 311)
Name: NF11468_low_11
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9393381 - 9393685
Alignment:
| Q |
1 |
ttaaatatggcacagtgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacatatttcaaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9393381 |
ttaaatatggcacattgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacgtatttcaaa |
9393480 |
T |
|
| Q |
101 |
actgaacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttcctaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9393481 |
actgaacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttcctaac |
9393580 |
T |
|
| Q |
201 |
taaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattcccatggtccttaatcacctgcacacacattcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9393581 |
taaacaatctaaaggattttcatcttttacatcagatttgaaaattctctttttgtcaactagattcccatggtccttaatcacctgcacacgcattcat |
9393680 |
T |
|
| Q |
301 |
ctcac |
305 |
Q |
| |
|
|||| |
|
|
| T |
9393681 |
atcac |
9393685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31943011 - 31943311
Alignment:
| Q |
1 |
ttaaatatggcacagtgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacatatttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31943011 |
ttaaatatggcacagtgtacttcatatcgaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacatatttcaaa |
31943110 |
T |
|
| Q |
101 |
act--gaacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttccta |
198 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31943111 |
actctgaacattataatgcaaaattagaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttactttccta |
31943210 |
T |
|
| Q |
199 |
actaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattcccatggtccttaatcacctgcacacacattc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31943211 |
actaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattaccatggtccttaatcacctgcacacacattc |
31943310 |
T |
|
| Q |
299 |
a |
299 |
Q |
| |
|
| |
|
|
| T |
31943311 |
a |
31943311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 1341211 - 1341499
Alignment:
| Q |
1 |
ttaaatatggcacagtgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacatatttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
1341211 |
ttaaatatggcacagtgtacttcatgtcaaaatagaattcacaaggaggaattttcttcttttttgcagcctgtagtgtataaaatcaacatatttcaaa |
1341310 |
T |
|
| Q |
101 |
act--gaacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttccta |
198 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
1341311 |
actctgaacattataatgcaa---------ttatacaacaaaagaa---ctacatgaagcacttacatcaggagaaatttgtacaatgttaactttccta |
1341398 |
T |
|
| Q |
199 |
actaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattcccatggtccttaatcacctgcacacacattc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
1341399 |
actaaacaatctaaaggattttcatcttttacatcagatatgaaaatcctctttttgtcaaccagattcccatggtccttaatcacctgcacacacattc |
1341498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 46630307 - 46630597
Alignment:
| Q |
1 |
ttaaatatggcacagtgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaacaaaatcaacatatttcaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
46630307 |
ttaaatatggtacagtgtacttcatatcaaaataaaattcactaggaggaattttcttcttttttgcagcctttagtatacaaaatcaacatatttcaaa |
46630406 |
T |
|
| Q |
101 |
actg--aacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttccta |
198 |
Q |
| |
|
||| ||||||||||||||||| || |||| || ||||||| ||| ||||||||||||||| ||||||||||||| ||||||| || |||| || |
|
|
| T |
46630407 |
actccaaacattataatgcaaaagtataagtcatgcaacaaaggaa---ctacacaaagcacttgcatcaggagaaatccgtacaattcctactttctta |
46630503 |
T |
|
| Q |
199 |
actaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattcccatggtccttaatcacctgcacac |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
46630504 |
actaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaaacagattcccgtggtccttgatcacctgcacac |
46630597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 5643280 - 5643573
Alignment:
| Q |
5 |
atatggcacagtgtacttcatatcaaaatagaagtcacaaggaggaattttcttcttttttgcagcctgtagtaaa---caaaatcaacatatttcaaaa |
101 |
Q |
| |
|
|||||||| |||||| ||||||||| |||| | ||||||||||||| ||||||| ||| ||| ||||||||| | |||| | ||||| | |||||| |
|
|
| T |
5643280 |
atatggcaaagtgtatttcatatcataatatagatcacaaggaggaacattcttctctttagcatcctgtagtatatatcaaattaaacatttatcaaaa |
5643379 |
T |
|
| Q |
102 |
ctg--aacattataatgcaaaattacaagttatacaacaaaagaagaactacacaaagcacttacatcaggagaaatttgtacaatgtttattttcctaa |
199 |
Q |
| |
|
|| || | |||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
5643380 |
ctctaaaaaacataatgcaaaattataaattacacaacaaaagaa------cacaaagcacttacatcaggagaaatttgtacaatgttaactttcttaa |
5643473 |
T |
|
| Q |
200 |
ctaaacaatctaaaggattttcatcttttacatcagatttgaaaatcctctttttgtcaactagattcccatggtccttaatcacctgcacacacattca |
299 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |||||||||||||||||||| |||| |||| |||| |||||||| ||| || ||||||||||||||||| |
|
|
| T |
5643474 |
ctaaacaatcaagagggttttcatctttcacatcagatttgaaaatccttttttcatcaatgagatccccatggttcttgataacctgcacacacattca |
5643573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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