View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11468_low_14 (Length: 252)

Name: NF11468_low_14
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11468_low_14
NF11468_low_14
[»] chr4 (8 HSPs)
chr4 (1-252)||(44865141-44865392)
chr4 (117-251)||(44883021-44883155)
chr4 (72-251)||(44851005-44851184)
chr4 (150-249)||(44899846-44899945)
chr4 (121-251)||(44839358-44839488)
chr4 (5-59)||(21344817-21344871)
chr4 (5-59)||(29195095-29195149)
chr4 (26-59)||(6606058-6606091)
[»] chr3 (4 HSPs)
chr3 (155-249)||(12925382-12925476)
chr3 (26-60)||(3054993-3055027)
chr3 (26-59)||(26871547-26871580)
chr3 (5-57)||(42799769-42799821)
[»] chr8 (5 HSPs)
chr8 (18-66)||(34778728-34778776)
chr8 (1-59)||(26688865-26688923)
chr8 (24-63)||(35287712-35287751)
chr8 (26-60)||(6530806-6530840)
chr8 (26-59)||(22268976-22269009)
[»] chr7 (8 HSPs)
chr7 (1-59)||(31835192-31835250)
chr7 (1-60)||(5579252-5579311)
chr7 (1-59)||(5273608-5273666)
chr7 (26-60)||(6426095-6426129)
chr7 (26-59)||(35328917-35328950)
chr7 (26-59)||(48039690-48039723)
chr7 (6-62)||(13587653-13587709)
chr7 (1-57)||(29385761-29385817)
[»] chr2 (4 HSPs)
chr2 (26-60)||(16525177-16525211)
chr2 (1-60)||(41908656-41908715)
chr2 (26-59)||(342395-342428)
chr2 (26-59)||(26482093-26482126)
[»] chr1 (6 HSPs)
chr1 (1-59)||(31605866-31605924)
chr1 (1-53)||(43445969-43446021)
chr1 (5-60)||(15581163-15581218)
chr1 (1-59)||(9570644-9570701)
chr1 (2-59)||(40257399-40257456)
chr1 (3-59)||(19940892-19940948)
[»] chr6 (4 HSPs)
chr6 (24-55)||(3869700-3869731)
chr6 (2-59)||(14557962-14558019)
chr6 (26-59)||(24334068-24334101)
chr6 (27-59)||(12253707-12253739)
[»] chr5 (2 HSPs)
chr5 (26-60)||(31669067-31669101)
chr5 (18-59)||(19373239-19373280)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 44865392 - 44865141
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggttacaatttgtataacttagcactcctaacataatcagactcc 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865392 tgaggaggagcacacatcaaggactcaagccaacaccatcaggccaacccaagtgggttacaatttgtataacttagcactcctaacataatcagactcc 44865293  T
Q  101 caacacaatgataataatcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44865292 caacacaatgataataatcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagattgaacctttaagatttttcagtctgcc 44865193  T
Q  201 ataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctatat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865192 ataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctatat 44865141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 44883155 - 44883021
Alignment:
Q  117 atcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  44883155 atcttaatatttcaaacagtgagaacttgtgtggaatgaacttactttagtcaaggctgaaccttgaagatttttaagtctgccatagaaaagtaggtgc 44883056  T
Q  217 tctctacctgtcaagctttcccacagcaagctata 251  Q
    ||||| |||||||||||||||||||||||||||||    
T  44883055 tctctgcctgtcaagctttcccacagcaagctata 44883021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 44851184 - 44851005
Alignment:
Q  72 acttagcactcctaacataatcagactcccaacacaatgataataatcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaag 171  Q
    ||||| || ||||||| |||||| ||||| ||||||   |||||||||  ||||||| ||||||| | |  |  |||||||||||||||| ||||||||     
T  44851184 acttaacattcctaacgtaatcatactcctaacacagcaataataatccaaatattttaaacagtaatagttcctgtggaatgaacttacatgagtcaaa 44851085  T
Q  172 actgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctata 251  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  44851084 actgaacctttaagattctttagtctgccataaaaaagtaggtgttctctacctgtcaagctttcccacagcaaactata 44851005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 44899945 - 44899846
Alignment:
Q  150 gaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta 249  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  44899945 gaatgaacttacttgagtcaagactgaacctttaaggtttttaagtctaccataaaaaagtaggtgttctctacctgtcaaactttcccacagcaagcta 44899846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 44839488 - 44839358
Alignment:
Q  121 taatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctc 220  Q
    |||| ||||||||||| |||| |  | ||| || |||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  44839488 taatgtttcaaacagtaagaattcctatggtatcaacttacttgagtcaagattgaacctgtaaggtttttaagtcttccataaaaaagtaggtgctctc 44839389  T
Q  221 tacctgtcaagctttcccacagcaagctata 251  Q
    |||||||||||||||||||||||||||||||    
T  44839388 tacctgtcaagctttcccacagcaagctata 44839358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 21344871 - 21344817
Alignment:
Q  5 gaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||   ||||| | |||||||||| |||||||||||||||||||||||    
T  21344871 gaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtgggtt 21344817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 29195149 - 29195095
Alignment:
Q  5 gaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||   ||||| | ||||||||||||| ||||||||||||||||||||    
T  29195149 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 6606091 - 6606058
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||||| ||||||||||||||||    
T  6606091 caagccaacaccatcagaccaacccaagtgggtt 6606058  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 12925382 - 12925476
Alignment:
Q  155 aacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta 249  Q
    |||||||||| || ||| | ||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||||    
T  12925382 aacttacttgtgttaaggcagaacctttaagatttttaagtctgccgtaaaagagtagatgctctcttcctgtcaagatttcccacagcaagcta 12925476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 3055027 - 3054993
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||| |||||||||||||||||||||    
T  3055027 caagccaacaccaccaggccaacccaagtgggtta 3054993  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 26871547 - 26871580
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  26871547 caagccaacaccaccaggccaacccaagtgggtt 26871580  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 42799769 - 42799821
Alignment:
Q  5 gaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtggg 57  Q
    ||||||||||   ||||| | ||||||||||||| ||||||||||||||||||    
T  42799769 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtggg 42799821  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 34778776 - 34778728
Alignment:
Q  18 caaggactcaagccaacaccatcaggccaacccaagtgggttacaattt 66  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  34778776 caaggtctcaagccaacaccaccaggcaaacccaagtgggttacaattt 34778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26688923 - 26688865
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||   ||||| | ||||||||||||| ||||||||||||||||||||    
T  26688923 tgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 35287751 - 35287712
Alignment:
Q  24 ctcaagccaacaccatcaggccaacccaagtgggttacaa 63  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  35287751 ctcaagccaacaccaccaggcctacccaagtgggttacaa 35287712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 6530840 - 6530806
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||| |||||||||||||||||||||    
T  6530840 caagccaacaccaccaggccaacccaagtgggtta 6530806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 22268976 - 22269009
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  22268976 caagccaacaccaccaggccaacccaagtgggtt 22269009  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31835250 - 31835192
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||   |||| || ||||||||||||| ||||||||||||||||||||    
T  31835250 tgaggaggagcacactccaagcacccaagccaacaccaccaggccaacccaagtgggtt 31835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5579252 - 5579311
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||||   ||||| | ||||||||||||| |||| ||||||||||||||||    
T  5579252 tgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtta 5579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5273608 - 5273666
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||    |||| | ||||||||||||| ||||||||||||||||||||    
T  5273608 tgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 6426095 - 6426129
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||| |||||||||||||||||||||    
T  6426095 caagccaacaccaccaggccaacccaagtgggtta 6426129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 35328917 - 35328950
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  35328917 caagccaacaccaccaggccaacccaagtgggtt 35328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 48039690 - 48039723
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  48039690 caagccaacaccaccaggccaacccaagtgggtt 48039723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 13587709 - 13587653
Alignment:
Q  6 aggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggttaca 62  Q
    ||||||||||  ||||| ||||||||||||||  || || |||||||||||||||||    
T  13587709 aggagcacagtccaaggtctcaagccaacaccgccaagctaacccaagtgggttaca 13587653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29385761 - 29385817
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtggg 57  Q
    ||||||||||||||   ||| | | ||||||||||||||| ||||||||||||||||    
T  29385761 tgaggaggagcacactccaaagtcccaagccaacaccatccggccaacccaagtggg 29385817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 16525211 - 16525177
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtta 60  Q
    |||||||||||||||||||||||||||||||||||    
T  16525211 caagccaacaccatcaggccaacccaagtgggtta 16525177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41908656 - 41908715
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||||   ||||| ||||| || |||||| |||||||||||||||||||||    
T  41908656 tgaggaggagcacactccaaggtctcaaaccgacaccaccaggccaacccaagtgggtta 41908715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 342428 - 342395
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  342428 caagccaacaccaccaggccaacccaagtgggtt 342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 26482126 - 26482093
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    |||||||||||||||||||||||| |||||||||    
T  26482126 caagccaacaccatcaggccaacctaagtgggtt 26482093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31605866 - 31605924
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||  |||||| | |||||||||||||||||||||||  |||||||||    
T  31605866 tgaggaggagcacacttcaaggtcccaagccaacaccatcaggccaacataagtgggtt 31605924  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43446021 - 43445969
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaag 53  Q
    ||||||||||||||   ||||||| |||||||||||||||| |||||||||||    
T  43446021 tgaggaggagcacactccaaggacccaagccaacaccatcaagccaacccaag 43445969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 15581163 - 15581218
Alignment:
Q  5 gaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||   ||||| | ||||||||||||| |||||||||||||||||||||    
T  15581163 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtta 15581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9570701 - 9570644
Alignment:
Q  1 tgaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    |||||| |||||||   ||||| |||||||||||||||||| |||||||||||||||||    
T  9570701 tgaggaagagcacactccaaggtctcaagccaacaccatca-gccaacccaagtgggtt 9570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 40257456 - 40257399
Alignment:
Q  2 gaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    |||||||||||||   | ||| |||||||||| |||| ||||||||||||||||||||    
T  40257456 gaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 19940892 - 19940948
Alignment:
Q  3 aggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||   ||||||| ||||| ||||||| ||| ||||||||||||||||    
T  19940892 aggaggagcacactccaaggacccaagctaacaccaccagaccaacccaagtgggtt 19940948  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 3869731 - 3869700
Alignment:
Q  24 ctcaagccaacaccatcaggccaacccaagtg 55  Q
    ||||||||||||||||||||||||||||||||    
T  3869731 ctcaagccaacaccatcaggccaacccaagtg 3869700  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 14558019 - 14557962
Alignment:
Q  2 gaggaggagcacagatcaaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    |||||||||||||  || ||| | ||||||||||||| ||| ||||||||||||||||    
T  14558019 gaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 24334068 - 24334101
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||| ||||||||||||||||||    
T  24334068 caagccaacaccatccggccaacccaagtgggtt 24334101  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 12253739 - 12253707
Alignment:
Q  27 aagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||||||||||||||| |||||||||||||||    
T  12253739 aagccaacaccatcaggtcaacccaagtgggtt 12253707  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 31669067 - 31669101
Alignment:
Q  26 caagccaacaccatcaggccaacccaagtgggtta 60  Q
    ||||||||||||||||| |||||||||||||||||    
T  31669067 caagccaacaccatcagaccaacccaagtgggtta 31669101  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 19373280 - 19373239
Alignment:
Q  18 caaggactcaagccaacaccatcaggccaacccaagtgggtt 59  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||    
T  19373280 caaggtctcaagccaacaccaccaggccaactcaagtgggtt 19373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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