View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_low_2 (Length: 599)
Name: NF11468_low_2
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 261 - 543
Target Start/End: Complemental strand, 33495317 - 33495035
Alignment:
| Q |
261 |
catggagagggtcatgaacatggccatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
360 |
Q |
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| T |
33495317 |
catggagagggtcatgaacatggtcatgatagcagcagcagtgacagtgattagatcttaatttcactgcttcatcatgttgagaggtaattaaaatttt |
33495218 |
T |
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| Q |
361 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataa-ttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
459 |
Q |
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| T |
33495217 |
gttttgctttatgacccttttatcagaattttacgtgattactatatataatttcgttactaacatgaatgtctatccgcttttttgtatcaaaattaat |
33495118 |
T |
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| Q |
460 |
aatacaagtttcaaaattttatcttagattgttnnnnnnnntcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
543 |
Q |
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| T |
33495117 |
aatacaagtttcaaaattttatctttgattgtt-aaaaaaatcaattatttgattggaaatgaatgaaaaatagttgcacacaa |
33495035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 33495563 - 33495348
Alignment:
| Q |
15 |
cacagaggagaacaacatggacatgtaggaggagaacaccatggtgagtacaaaggagaacaacatggatttgtaggaggacatggtggtgagcacaaag |
114 |
Q |
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| T |
33495563 |
cacaaaggagaacaacatggacatgtaggaggagaacaccacggtgagtacaaaggagaacaacatggatttgtaggaggacatggtggtgagcacaaag |
33495464 |
T |
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| Q |
115 |
gagagcaacatggatttggtcatggagaccacaaggaaggacaccatggagaagagcacaaggagggatttgttgacaagatcaaggacaagattcatgg |
214 |
Q |
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| T |
33495463 |
gagagcaacatggatttggtcatggagaccacaaggaaggacaccatggggaagagcacaaggagggatttgttgacaagatcaaggacaagattcatgg |
33495364 |
T |
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| Q |
215 |
tgaaggtgcagatggt |
230 |
Q |
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| T |
33495363 |
tgaaggtgcagatggt |
33495348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 319
Target Start/End: Original strand, 9757719 - 9757748
Alignment:
| Q |
290 |
tagcagcagcagtgacagtgattagatctt |
319 |
Q |
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| T |
9757719 |
tagcagcagcagtgacagtgattagatctt |
9757748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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