View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11468_low_22 (Length: 212)

Name: NF11468_low_22
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11468_low_22
NF11468_low_22
[»] chr1 (2 HSPs)
chr1 (19-195)||(52092666-52092841)
chr1 (39-195)||(52082489-52082645)
[»] chr4 (5 HSPs)
chr4 (41-154)||(1754429-1754542)
chr4 (132-195)||(1548459-1548522)
chr4 (132-172)||(546914-546954)
chr4 (39-155)||(6006235-6006351)
chr4 (39-95)||(1528338-1528394)
[»] chr2 (1 HSPs)
chr2 (138-191)||(44575534-44575587)
[»] chr6 (4 HSPs)
chr6 (137-195)||(6585272-6585330)
chr6 (132-195)||(6432162-6432225)
chr6 (133-191)||(14802338-14802396)
chr6 (130-191)||(6426510-6426571)
[»] chr5 (2 HSPs)
chr5 (133-195)||(41901570-41901632)
chr5 (132-195)||(32267476-32267539)
[»] chr8 (4 HSPs)
chr8 (138-195)||(18315308-18315365)
chr8 (132-195)||(27922509-27922572)
chr8 (132-175)||(32151302-32151345)
chr8 (138-175)||(17636456-17636493)
[»] chr3 (2 HSPs)
chr3 (132-193)||(51113818-51113879)
chr3 (27-99)||(514859-514931)
[»] scaffold0041 (1 HSPs)
scaffold0041 (132-172)||(39185-39225)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 52092666 - 52092841
Alignment:
Q  19 acctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092666 acctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagt 52092764  T
Q  119 ccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  52092765 ccaattgtagtagcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttc 52092841  T

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Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 52082489 - 52082645
Alignment:
Q  39 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 138  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52082489 atttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaa 52082588  T
Q  139 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 52082645  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 1754429 - 1754542
Alignment:
Q  41 ttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaaca 140  Q
    |||||||| |||  |||||||| ||||||||||| ||| ||||||||||||||||||||| || |||   ||| || ||||| || ||||  ||| | ||    
T  1754429 ttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatattataacatttttctaaatccaattgcagtagtccagagca 1754528  T
Q  141 actctttgagatca 154  Q
    ||||||||||||||    
T  1754529 actctttgagatca 1754542  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 1548522 - 1548459
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    ||||||||||||||||||||||||||  | |||||||||||||||  |||| | ||||||||||    
T  1548522 cccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttc 1548459  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 546914 - 546954
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcat 172  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  546914 cccacaacaactctttgagatcacatagagtgtttcatcat 546954  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 6006235 - 6006351
Alignment:
Q  39 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 138  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||| |||| ||||| || || ||| ||| |||| || |  || |||| |||| |     
T  6006235 atttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaacgtcccaaatcaagttgcagtagcccaaag 6006334  T
Q  139 caactctttgagatcac 155  Q
    |||||| ||||||||||    
T  6006335 caactcattgagatcac 6006351  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 1528394 - 1528338
Alignment:
Q  39 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgt 95  Q
    |||||||||||||| | |||||||||||||||| || ||| | ||||| ||||||||    
T  1528394 atttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt 1528338  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 44575587 - 44575534
Alignment:
Q  138 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaa 191  Q
    ||||||||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  44575587 acaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaa 44575534  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 6585330 - 6585272
Alignment:
Q  137 aacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||| | ||||||||||    
T  6585330 aacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttc 6585272  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 6432162 - 6432225
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||   |||| ||||||||||||    
T  6432162 cccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttc 6432225  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 14802338 - 14802396
Alignment:
Q  133 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaa 191  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||  ||||| ||||||||    
T  14802338 ccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaa 14802396  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 6426510 - 6426571
Alignment:
Q  130 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaa 191  Q
    |||| ||||||| ||||||||||| |||| || ||||||||||||||  |||| ||||||||    
T  6426510 atccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaa 6426571  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 41901632 - 41901570
Alignment:
Q  133 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    |||||||||||||||||||||| ||| | || ||||||||||| |||||| | ||||||||||    
T  41901632 ccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttc 41901570  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 32267476 - 32267539
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| | |||| | ||||||||||    
T  32267476 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttc 32267539  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 18315365 - 18315308
Alignment:
Q  138 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    ||||||||||||||||||||| | || ||||||||||| |||||| | ||||||||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttc 18315308  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 27922509 - 27922572
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttc 195  Q
    ||||||||||||||||||||||| ||| | || |||||||||||  ||||| | ||||||||||    
T  27922509 cccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttc 27922572  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 32151302 - 32151345
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaa 175  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||    
T  32151302 cccactacaactctttgagatcacatagagtgtttcatcatcaa 32151345  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 17636493 - 17636456
Alignment:
Q  138 acaactctttgagatcacatacaatgtttcatcatcaa 175  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaa 17636456  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 51113879 - 51113818
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagt 193  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||   |||| ||||||||||    
T  51113879 cccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagt 51113818  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 514931 - 514859
Alignment:
Q  27 acaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgata 99  Q
    |||||||| || ||| |||||||||| ||||||||||||||  || || ||| |||||||  |||||||||||    
T  514931 acaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata 514859  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 39185 - 39225
Alignment:
Q  132 cccacaacaactctttgagatcacatacaatgtttcatcat 172  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  39185 cccactacaactctttgagatcacataaagtgtttcatcat 39225  T

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