View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_low_3 (Length: 526)
Name: NF11468_low_3
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Complemental strand, 15180147 - 15179635
Alignment:
| Q |
14 |
atgaaagactttaccaaatacaattgccacatccgttatggttagatcttccactaacatctatgacttgggtataactttaaaatttcacaaatcgtaa |
113 |
Q |
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| T |
15180147 |
atgaaagactttaccaaatacaattgccacatccgatatggttagaccttccactaacatctatgacttgggtataacttcaaaatttcacaactcgtaa |
15180048 |
T |
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| Q |
114 |
attacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcagatgctag |
213 |
Q |
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| T |
15180047 |
attacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagcagggagaaggtcaagcatagcagatgctag |
15179948 |
T |
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| Q |
214 |
tgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaattttccac |
313 |
Q |
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| T |
15179947 |
tgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaattttccac |
15179848 |
T |
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| Q |
314 |
ataaatttccttatctacaactaaattcatatccatacaataatattttctttgactcgtatcgagtcagaggatcagatgaaggagaaaatactaatat |
413 |
Q |
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| T |
15179847 |
ataaattcccttctctacaactaaattcatatccatacaataatattttctttgactcgtatcgagtcaaaggatcagatgaaggagaaaatactaatat |
15179748 |
T |
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| Q |
414 |
aacaaccgattactaacatttctccgtctaaaaaacatatactatgctatttaacttggtggttgatttgtacatacctgaggcaactaagaagaaacat |
513 |
Q |
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| T |
15179747 |
aacaaccgattactaacatttatctgtctaaaaaacatataccatgctatttaatttggtgatagatttgtacatacctgaggcaactaagaagaaacat |
15179648 |
T |
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| Q |
514 |
tctacataaaatt |
526 |
Q |
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| T |
15179647 |
tctacataaaatt |
15179635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 15189688 - 15189565
Alignment:
| Q |
149 |
aaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcagatgctagtgtgggagagctacattcaattccagtattcgtta |
248 |
Q |
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| T |
15189688 |
aaccttgaaattacagcaagtatgaacgtgaaagcagggacaaggtcaaccatagcagatgccaatgtgggagagctatatccaattccagtattcatta |
15189589 |
T |
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| Q |
249 |
aaatctgcactgcagtactgcaca |
272 |
Q |
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| T |
15189588 |
aaatctgcactgcagtactgcaca |
15189565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 15201648 - 15201610
Alignment:
| Q |
150 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
188 |
Q |
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| T |
15201648 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15201610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 15208595 - 15208557
Alignment:
| Q |
150 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
188 |
Q |
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| T |
15208595 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15208557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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