View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_low_4 (Length: 481)
Name: NF11468_low_4
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 48036539 - 48036089
Alignment:
| Q |
19 |
ggtcctgtgtcttctcatgataattagaccactggatgaagctgccgatttctaaagctgaaacgttgttctattaagatatcaaagaggtagccaccat |
118 |
Q |
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| T |
48036539 |
ggtcctgtgtcttctcatgataatgagaccactggatgaagctgctgatttctaaagctgaaacgttgttctattaagatatcaaagaggtagccaccat |
48036440 |
T |
|
| Q |
119 |
agcatgacatatctggtatatacttggattctttaataatttagacagaggtttggtccctcattgatgtgtatagagaaatatcggtcaaaagataaca |
218 |
Q |
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| T |
48036439 |
agcatgacatatctggtatatacttggattctttaataatttagacagaggtttggtccctcattgatgtgtatagagaaatatcggtcaaaagataaca |
48036340 |
T |
|
| Q |
219 |
ccttaaataaatcaaaattacctttagatatagtctcttcagttgctaccaaatataatttgatttaagtttaccgaataaaaagtaacagagagtctac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48036339 |
acttaaataaatcaaaattacctttagatatagtctcttcagttgctaccaaatataatttgatttaagtttaccgaataaaaagtaac--agagtctac |
48036242 |
T |
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| Q |
319 |
tttcttatttaccattcaggtgtaaatttaggattaatctttagaaataaattttgataaactatgattcacaaatcacaccagtcttctaagaccaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48036241 |
tttcttatttaccattcaggtgtaaatttaggattaatctttagaaataaattttgataaactatgattcacaaatcacaccagtcttctaagaccaaca |
48036142 |
T |
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| Q |
419 |
tgtttttcagccaacacaaatacactaattcatgtattattccagcattcatctca |
474 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48036141 |
tgtttttcagccaacacaaatacactaattcatg---tattccagcattcatctca |
48036089 |
T |
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