View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11468_low_8 (Length: 362)
Name: NF11468_low_8
Description: NF11468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11468_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2440315 - 2440599
Alignment:
| Q |
1 |
ttgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2440315 |
ttgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcttgctaaagaagatgggaactataagaatg |
2440414 |
T |
|
| Q |
101 |
atttgatgaaattcactatttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcat |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2440415 |
atttgatgaaattcactagttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaactatgagcagtgttcat |
2440514 |
T |
|
| Q |
201 |
ttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttagga |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||||||||||||| |
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| T |
2440515 |
ttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttagga |
2440599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 41665552 - 41665198
Alignment:
| Q |
1 |
ttgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| |
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| T |
41665552 |
ttgacatcatttgcaaaagaggctagtgcgacattagctaaagagttctttgcaaatgcatatatgggtactgccaaagaagatgggaactatgagaatg |
41665453 |
T |
|
| Q |
101 |
atttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgagcagcgttc |
198 |
Q |
| |
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|| ||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
41665452 |
atctgatgaaattcactagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgggcttgagaactatgagcagtgttc |
41665353 |
T |
|
| Q |
199 |
atttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatgga |
298 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||| |
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| T |
41665352 |
gtttgaagcaagaaagaccaagggctctaacattgatcatcaggagattcgtagcactctgtgcaggcccgaggctgattgggttaggagaaaagatgga |
41665253 |
T |
|
| Q |
299 |
acaccagcaaaacttcgcacgtgtgacctcacccccgttgctaaagtatgggcaa |
353 |
Q |
| |
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|||||| ||| ||| | ||| | ||||||||| ||| ||||||||| |||||||| |
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|
| T |
41665252 |
acaccatcaagactccacacttctgacctcacacccattgctaaagcatgggcaa |
41665198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 41716568 - 41716223
Alignment:
| Q |
1 |
ttgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatg |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
41716568 |
ttgacatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaa------------------gaatg |
41716487 |
T |
|
| Q |
101 |
atttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgagcagcgttc |
198 |
Q |
| |
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|| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||| || |||| |
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| T |
41716486 |
atcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttc |
41716387 |
T |
|
| Q |
199 |
atttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatgga |
298 |
Q |
| |
|
||||||||||||||| | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716386 |
atttgaagcaagaaaggccaagggttctaacgttgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatgga |
41716287 |
T |
|
| Q |
299 |
acaccagcaaaacttcgcacgtgtgacctcacccccgttgctaaagtatgggcaatgtttgttt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
41716286 |
acaccagcaaaacttcgcacgtgtgacctcactcccgttgctaaagtatgggcaatgtttgttt |
41716223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 350
Target Start/End: Complemental strand, 41656789 - 41656440
Alignment:
| Q |
2 |
tgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatga |
101 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
41656789 |
tgacaacatttgcaaaagaggctagtgcc-cattagctaaagagttctttgcaaatgcatatctgggtcctgctaaagaagatgggaactataagaatga |
41656691 |
T |
|
| Q |
102 |
tttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgagcagcgttca |
199 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||| |||||||||||| | |||||||||||| ||||||| |||| ||||||||||||||| ||||| |
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| T |
41656690 |
tttgatgaaattcactagttttgtcagaggcaagatggtgccatttcatgagaaaattatcaatcgattgtttgggctagagaactatgagcagtgttca |
41656591 |
T |
|
| Q |
200 |
tttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatggaa |
299 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||| ||||||| |||||||||| |
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| T |
41656590 |
tttgaagcaagaaaggcaaagggatctaacattgatcatcaggagattcttagtactctgtgcaggcccgaggccgattggattaggaagaaagatggaa |
41656491 |
T |
|
| Q |
300 |
caccagcaaaacttcgcacgtgtgacctcacccccgttgctaaagtatggg |
350 |
Q |
| |
|
||||| ||||||| | | | |||||| || ||| ||||||||| ||||| |
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| T |
41656490 |
caccaataaaacttaactcttctgacctgacacccattgctaaagcatggg |
41656440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 41706765 - 41706420
Alignment:
| Q |
1 |
ttgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatg |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
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|
| T |
41706765 |
ttgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaa------------------gaatg |
41706684 |
T |
|
| Q |
101 |
atttgatgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggcttgagaactatgagcagcgttc |
198 |
Q |
| |
|
| ||||||||||||| |||| | ||||||||||| || |||||||| | | ||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
41706683 |
agcgaatgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttc |
41706584 |
T |
|
| Q |
199 |
atttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatgga |
298 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
41706583 |
ctttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacgga |
41706484 |
T |
|
| Q |
299 |
acaccagcaaaacttcgcacgtgtgacctcacccccgttgctaaagtatgggcaatgtttgttt |
362 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
41706483 |
acaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttt |
41706420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 41648690 - 41648395
Alignment:
| Q |
11 |
ttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatgatttgatgaa |
110 |
Q |
| |
|
||||| |||||||| |||| ||||| |||||||| || | ||||||||||||| |||||| ||||||||||||||||| ||||||||||| | ||| | |
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|
| T |
41648690 |
ttgcagaagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcctactaaagaagatgggaacaataagaatgatctaatgca |
41648591 |
T |
|
| Q |
111 |
attcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttgaagca |
208 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||| ||||| || |||| |||||| || |
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|
| T |
41648590 |
attcactagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggcttgagaacaatgaggagtgttcctttgaaaca |
41648491 |
T |
|
| Q |
209 |
agaaatggcaagggatctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatggaacacca |
304 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||| ||||||| |
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|
| T |
41648490 |
agaaagaccaagggctctaacattgatcatcaggagattcacagtactctgtgtaggcccgaggccgattgggttaggaacaatgatgaaacacca |
41648395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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