View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11469_high_4 (Length: 419)
Name: NF11469_high_4
Description: NF11469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11469_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 50 - 419
Target Start/End: Original strand, 18389341 - 18389707
Alignment:
| Q |
50 |
cccgaccattttccgaagtttccttgcattttgaaagtaaaattaaaatgtttcaggacaaaacaaatccttaatttgtaagatcaaagttcaatgtttc |
149 |
Q |
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| T |
18389341 |
cccgaccattttccgaagtttccttgcattttgaaagtaaaattaaaatgtttcaggacaaaacaaatccttaatttgtaagatcaaagttcaatgtttc |
18389440 |
T |
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| Q |
150 |
tggcagcatcactataatggtttcttctagtgttaactcggcgcttccagtaaaccattccaatgaaacctaatatggcagctgccataagtgtacctat |
249 |
Q |
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| T |
18389441 |
tggcagcatcactataacggtttcttctaatgttaactcggcgcttccagcaaaccattccaatgaaacctaatatggcagctcccagaagtgtacctat |
18389540 |
T |
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| Q |
250 |
tactatccccgccttttgaccgccacttagacccgatgagcctccttgaccagccacagtaggttccggttctggtgcatttggattagggggaggtgga |
349 |
Q |
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| T |
18389541 |
tactatccccgccttttgaccgccacttagacccgatgagcctccttgaccagccgcagtaggttccggttctggtgcatttggattagggggaggt--- |
18389637 |
T |
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| Q |
350 |
gaagaaataggactcggaacaggcgctggtggaggcgaattaggaaatggaacaggcgctggtgtaggcg |
419 |
Q |
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| T |
18389638 |
gaagaaataggactcggaacaggcgctggtggaggcgaattaggaggcggaacaggagctggtgtaggcg |
18389707 |
T |
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