View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11469_low_3 (Length: 441)
Name: NF11469_low_3
Description: NF11469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11469_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 156 - 441
Target Start/End: Complemental strand, 55652483 - 55652192
Alignment:
| Q |
156 |
gtctctagcacaattttctcactccacatttaggaagacctcaactaaactaaataannnnnnnnnn-----aattatccttctgtcccctttataacaa |
250 |
Q |
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| T |
55652483 |
gtctctagcacaattttctcactccacatttaggaagacctcaactaaactaaataatttttttttttttttaattatccttctgtcccctttattacaa |
55652384 |
T |
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| Q |
251 |
cattagaggatccatttgccttctttggagataactcatttccattttttcttttacattttctcaaatgtccacatacannnnnnnnnaggaataaatg |
350 |
Q |
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| T |
55652383 |
cattagaggatccatttgccttctttggagataactcatttccattttttcttttacattttctcaaatgtccacatacatttttttttaggaataaatg |
55652284 |
T |
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| Q |
351 |
tccacatacatctctacctttaaatatatatannnnnnnaaattctttttctccat-ctttaaatgaatggggaaaattgcaatagactttc |
441 |
Q |
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| T |
55652283 |
tccacatacatctctacctttaaatatatatatttttttaaattctttttctccatcctttaaatgaatggggaaaattgcaacagactttc |
55652192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 55652617 - 55652507
Alignment:
| Q |
23 |
tagtaacacatatctttccattaattatgttgaatgctgattacttgctattactatcattctttcagagcaacattggcttcaactttattttgatgat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55652617 |
tagtaacacatatctttccattaattatgttgaatgctgattacttactattactatcattctttcagagcaacattggcttcaactttattttgatgat |
55652518 |
T |
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| Q |
123 |
aatttacgtaa |
133 |
Q |
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| T |
55652517 |
aatttacgtaa |
55652507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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