View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11469_low_7 (Length: 224)

Name: NF11469_low_7
Description: NF11469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11469_low_7
NF11469_low_7
[»] chr7 (7 HSPs)
chr7 (18-207)||(17734406-17734595)
chr7 (28-207)||(17743656-17743835)
chr7 (26-207)||(17716363-17716544)
chr7 (26-207)||(16729303-16729484)
chr7 (26-207)||(17706375-17706556)
chr7 (26-207)||(16720430-16720611)
chr7 (26-207)||(17697444-17697625)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 17734406 - 17734595
Alignment:
Q  18 acatcagagcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  17734406 acatcagagcagaatctcatcggaaaatcactgacaaacctcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaa 17734505  T
Q  118 agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  17734506 agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactgccggctccgagggtcccacacaaaaccaacttctct 17734595  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 17743656 - 17743835
Alignment:
Q  28 agaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgttgt 127  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  17743656 agaatctcatcggaaaatcactcaccaaattcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaaagaacattgt 17743755  T
Q  128 gttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  17743756 gttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctct 17743835  T

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Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 17716363 - 17716544
Alignment:
Q  26 gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt 125  Q
    ||||||||||||| |||||||||| || ||||| |||||||||||  |||||||||||||||||||||||||| || |||||||||| |||||||| |||    
T  17716363 gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaaaagaatgtt 17716462  T
Q  126 gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| | ||||| ||||||||||    
T  17716463 gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccggctccgagggtcccactcaaaaacaacttctct 17716544  T

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Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 16729303 - 16729484
Alignment:
Q  26 gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt 125  Q
    ||||||||||||| |||||||||| || ||||| |||||||||||  |||||||||||||||||||||||||| || || ||||||| ||||||||||||    
T  16729303 gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt 16729402  T
Q  126 gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||| | ||||| ||||||||||    
T  16729403 gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctct 16729484  T

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Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 17706375 - 17706556
Alignment:
Q  26 gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt 125  Q
    ||||||||||||| |||||||||| || ||||| |||||||||||  |||||||||||||||||||||||||| || || ||||||| ||||||||||||    
T  17706375 gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt 17706474  T
Q  126 gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||| | ||||| ||||||||||    
T  17706475 gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctct 17706556  T

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Target: chr7; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 16720430 - 16720611
Alignment:
Q  26 gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt 125  Q
    |||||||||||||||||||||| | || ||||| |||||| ||||  |||||||||||||||||||||||||| || |||||||||| ||| ||||||||    
T  16720430 gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt 16720529  T
Q  126 gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    |||||||||||||||||||| |||||||| |||| ||||||  |||||||||||||||||||| | ||||| ||||||||||    
T  16720530 gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctct 16720611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 17697444 - 17697625
Alignment:
Q  26 gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt 125  Q
    |||||||||||||||||||||| | || ||||| |||||| ||||  |||||||||||||||||||||||||| || |||||||||| ||| ||||||||    
T  17697444 gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt 17697543  T
Q  126 gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctct 207  Q
    |||||||||||||||||||| |||||||| |||| ||||||  |||||||||||||||||||| | ||||| ||||||||||    
T  17697544 gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctct 17697625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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