View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_10 (Length: 543)
Name: NF11470_high_10
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 28897101 - 28896753
Alignment:
| Q |
9 |
agcagagaaaaagagaaaggtgagtcacaggattcacaatggagagtggttcagttaagagaaaaagtggtggtggtggtggaaacgcagtagaggttct |
108 |
Q |
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| T |
28897101 |
agcaaagaaaaagagaaaggtgagtcacaggattcacaatggagagtggttcagttaagagaaaaagtggtggtggtggtggaaacgcagtagaggttct |
28897002 |
T |
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| Q |
109 |
agatggttctaatattatggagttagttggaaacaaagatgtttttagtaactttgtgaaccataagtttcaagagttggatagagataaagatggtaaa |
208 |
Q |
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| T |
28897001 |
agatggttctaatattatggagttagttggaaacaaagatgtttttagtaactttgtgaaccataagtttcaagagttggatagagataaagatggtaaa |
28896902 |
T |
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| Q |
209 |
ctctctctgactgaacttcaacctgctgtttctgatattggtgctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatctattctg |
308 |
Q |
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| T |
28896901 |
ctctctctgactgaacttcaacctgctgtttctgatattggttctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatctattctg |
28896802 |
T |
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| Q |
309 |
aggtattactcttcattaatattaattacaaccatttatgattatgtatgcat |
361 |
Q |
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| T |
28896801 |
aggtattactcttcattaat----attacaaccatttatgattatatatgcat |
28896753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 391 - 514
Target Start/End: Complemental strand, 28896750 - 28896627
Alignment:
| Q |
391 |
atatatagtgcaatattctatttacttctttgctatagtttgataaacatatgtttgaatttgccaacaaagtttgttctctaagataacaaagttttaa |
490 |
Q |
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| T |
28896750 |
atatatagtgtaatattctatttacttctttgctatagattgatacacatatgtttgaatttggcaacaaagtttgttctctaagataacaaagttttaa |
28896651 |
T |
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| Q |
491 |
taattaattttagctaaacaagaa |
514 |
Q |
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| T |
28896650 |
taattaatttcagctaaacaagaa |
28896627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 55095177 - 55095247
Alignment:
| Q |
233 |
gctgtttctgatattggtgctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatcta |
303 |
Q |
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| T |
55095177 |
gctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatcta |
55095247 |
T |
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