View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_high_11 (Length: 539)

Name: NF11470_high_11
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_high_11
NF11470_high_11
[»] chr4 (2 HSPs)
chr4 (14-523)||(56539722-56540249)
chr4 (110-158)||(23992450-23992498)
[»] chr1 (2 HSPs)
chr1 (214-523)||(32791308-32791634)
chr1 (50-179)||(48183395-48183524)
[»] chr2 (2 HSPs)
chr2 (50-204)||(25124768-25124920)
chr2 (99-164)||(7768800-7768865)
[»] chr7 (3 HSPs)
chr7 (54-201)||(20266702-20266846)
chr7 (145-204)||(20249946-20250005)
chr7 (49-85)||(1483562-1483598)
[»] chr8 (4 HSPs)
chr8 (128-198)||(28940854-28940924)
chr8 (149-204)||(31164452-31164507)
chr8 (50-85)||(31166094-31166129)
chr8 (50-91)||(31164352-31164393)
[»] chr5 (1 HSPs)
chr5 (51-83)||(19365671-19365703)


Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 56540249 - 56539722
Alignment:
Q  14 agagagagaaaaaatacaaacaacactgtttttcatgttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaa 113  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  56540249 agagagagaaaaa-tacaaacaacactatttttcatgttttttaaattctttgttatatgtttgaatgagttgcatttaaaaaaatttgtttactgctaa 56540151  T
Q  114 aacttattattatttgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagatggatagaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56540150 aacttattattatttgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagatggatagaag 56540051  T
Q  214 aatgcctgatatagatggattcgaggtcgccgcaaggattaggaagtttaaaagcggaaataggcctataattgttgcc-------------------aa 294  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                   ||    
T  56540050 aatgcctgatatagatggattcgaggtcgccgcaaggattcggaagtttaaaagcggaaataggcctataattgttgccttgattgcaagtgcagaagaa 56539951  T
Q  295 gatctgtgtgtgggaaaggttatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctga 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56539950 gatctgtgtgtgggaaaggttatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctga 56539851  T
Q  395 tgcaaggaaatatttgaaaaatggatggtgcaagttnnnnnnncactacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggt 494  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56539850 tgcaaggaaatatttgaaaaatggatggtgcaagttaaaaaaacactacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggt 56539751  T
Q  495 agaaatttatagaacatagttctctttgg 523  Q
    |||||||||||||||||||||||||||||    
T  56539750 agaaatttatagaacatagttctctttgg 56539722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23992450 - 23992498
Alignment:
Q  110 ctaaaacttattattatttgaacttgaatcactactaaaatgataaact 158  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||    
T  23992450 ctaaaacttattagtatttgaacatgagtcgctactaaaacgataaact 23992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 214 - 523
Target Start/End: Original strand, 32791308 - 32791634
Alignment:
Q  214 aatgcctgatatagatggattcgaggtcgccgcaaggattaggaagtttaaaagcggaaataggcctataattgttgcc--------aagatctg----- 300  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||  | |         
T  32791308 aatgcctgatatagatggattcgaagtcgccgcaaggattcggaagtttaaaagcggaaataggcctataattgttgccttgactgcaagtgcagaagaa 32791407  T
Q  301 --tgtgtgggaaaggt-tatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctgatgc 397  Q
      | ||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  32791408 gatttgtgggaaaagtgtatgcagattggtgttaatggagtaatccgaaaaccggttttgatgcaaggaattgctagtgaactcagaagaattctgatgc 32791507  T
Q  398 aaggaaatatttgaaaaatggatggtgcaagtt-nnnnnnncactacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggtag 496  Q
    | |||||| ||||||||||||||||||||||||        ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32791508 agggaaatctttgaaaaatggatggtgcaagttaaaaaaatcactacagcatctagtaattaattaaagttatttgaagtcacattcttgttcttggtag 32791607  T
Q  497 aaatttatagaacatagttctctttgg 523  Q
    |||||||||||||| ||||||||||||    
T  32791608 aaatttatagaacacagttctctttgg 32791634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 48183395 - 48183524
Alignment:
Q  50 gttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaa 149  Q
    |||||| |||||||||||||||||||| ||||||||  ||||        ||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  48183395 gtttttgaaattctttgttatatgtttaaatgagttatattttaaaaaaattgtttattgctaaaacttattagtatttgaacttgaatcgctactaaaa 48183494  T
Q  150 tgataaactgtcaaattcataggtttataa 179  Q
    || |||||||||||||||| ||| ||||||    
T  48183495 tgttaaactgtcaaattcacaggcttataa 48183524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 25124768 - 25124920
Alignment:
Q  50 gttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaa 149  Q
    ||||||| |||||||||||||||  |||||||||||| ||||        ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  25124768 gtttttttaattctttgttatataattgaatgagttgtatttaaaaaaaattgtttactgctaaaacttattattatttgaacttgagtcgctattaaaa 25124867  T
Q  150 tgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 204  Q
     |||||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  25124868 cgataaattgtcaaattcataggtttata--ttaaaaaggagagaacaaatagat 25124920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 7768800 - 7768865
Alignment:
Q  99 tttgtttactgctaaaacttattattatttgaacttgaatcactactaaaatgataaactgtcaaa 164  Q
    |||||| | ||||||||||||||| ||||||||| ||| ||  |||||||| |||||||| |||||    
T  7768800 tttgttaattgctaaaacttattagtatttgaacctgagtcgttactaaaacgataaactatcaaa 7768865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 20266846 - 20266702
Alignment:
Q  54 tttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaatgat 153  Q
    |||||||||||||||| |||||| ||||||||| ||||       || ||||| |  ||||| |||||| |||||||||||||||| ||||||||| |||    
T  20266846 tttaaattctttgttacatgtttaaatgagttgtatttaaaaaaatt-gtttattattaaaatttattagtatttgaacttgaatcgctactaaaacgat 20266748  T
Q  154 aaactgtcaaattcataggtttataacttaaaaaggagagaataaata 201  Q
    |||| |||||||||| |  |||||||  ||||||||||||||||||||    
T  20266747 aaaccgtcaaattcaca--tttataaactaaaaaggagagaataaata 20266702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 20250005 - 20249946
Alignment:
Q  145 taaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 204  Q
    ||||| |||||||||||||||||| | ||||||||  ||||||| |||||||||||||||    
T  20250005 taaaacgataaactgtcaaattcacatgtttataaactaaaaagaagagaataaatagat 20249946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 1483598 - 1483562
Alignment:
Q  49 tgttttttaaattctttgttatatgtttgaatgagtt 85  Q
    ||||||||||||||| | |||||||||||||||||||    
T  1483598 tgttttttaaattctatattatatgtttgaatgagtt 1483562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 28940854 - 28940924
Alignment:
Q  128 tgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataa 198  Q
    ||||||||| |  ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28940854 tgaacttgagttgctattaaaacgataaactgtcaaattcataggtttataaattaaaaaggagagaataa 28940924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 31164452 - 31164507
Alignment:
Q  149 atgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 204  Q
    |||||||||||||||||||| ||||||||||  |||||||||||| ||||||||||    
T  31164452 atgataaactgtcaaattcacaggtttataaactaaaaaggagaggataaatagat 31164507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 31166129 - 31166094
Alignment:
Q  50 gttttttaaattctttgttatatgtttgaatgagtt 85  Q
    ||||||||||||||||||||||||||||||||||||    
T  31166129 gttttttaaattctttgttatatgtttgaatgagtt 31166094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 31164352 - 31164393
Alignment:
Q  50 gttttttaaattctttgttatatgtttgaatgagttgcattt 91  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  31164352 gttttttaaattatttgttatatgtttgaatgagttgtattt 31164393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 19365703 - 19365671
Alignment:
Q  51 ttttttaaattctttgttatatgtttgaatgag 83  Q
    |||||||||||||||||| ||||||||||||||    
T  19365703 ttttttaaattctttgttgtatgtttgaatgag 19365671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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