View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_17 (Length: 450)
Name: NF11470_high_17
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 450
Target Start/End: Complemental strand, 8238474 - 8238041
Alignment:
| Q |
12 |
ggtgatgaagaaacattcacattatttgcagtactattctatagaagaaatccccccaagctcatgtatctcagaagagaagaagtaggcaattggttaa |
111 |
Q |
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| T |
8238474 |
ggtgatgaaaaaacattcacattatttgcagtactattctatagaagaaatccccccaagctcatgtatctcagaagagaagaagtaggcaattggttaa |
8238375 |
T |
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| Q |
112 |
attgtttctaacttaaggactgactgagacacaacgaagtagtcgagctctttgctaaaaaatgtgtactaatatagtatccaatgtgagcacgaatgaa |
211 |
Q |
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| T |
8238374 |
attgtttctaacttgaggactga----gacacaacgaagtagtcgagctctttgctaaaaaatgtgtgctaatatagtatcgaatgtgagcacgaattaa |
8238279 |
T |
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| Q |
212 |
atatatgtttggtctcacattgaatttgctcaaatcagggttagtctctctaatttcgacaaacttaaaatgatacaaaacatgctcggagatcaacttg |
311 |
Q |
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| T |
8238278 |
atgtatgtttggtctcacattgaatttgctcaaatcagggttagtctctctaatttcgacaaacttaaaatgatacaaaacatgctcggagatcaacttg |
8238179 |
T |
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| Q |
312 |
gagtgtcacgagatggagagtttgctctgagtataggatattagaaattaatgttggaacaataacttgtgcataaagaaccaagtacatctaaaattgt |
411 |
Q |
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| T |
8238178 |
gagtgtcatgagatggagagtttgctctgagtataggatattagaaattaatgttggaacaataacttgtgcataaagaa-caagtacatctaaaattgt |
8238080 |
T |
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| Q |
412 |
atcaatcaagaagcagaggaaaccaaaaacatgtataca |
450 |
Q |
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| T |
8238079 |
atcaatcaagaagcagaggaaaccaaaaacatgtataca |
8238041 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 35904503 - 35904456
Alignment:
| Q |
392 |
ccaagtacatctaaaattgtatcaatcaagaagcagaggaaaccaaaa |
439 |
Q |
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| T |
35904503 |
ccaagcacatctaatattgtatcaatcaagaggcagcggaaaccaaaa |
35904456 |
T |
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