View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_20 (Length: 438)
Name: NF11470_high_20
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 54280642 - 54281064
Alignment:
| Q |
14 |
aataatttcattaagttttacgacatgaaagagggtggcttttaggaaatgagaatggatggaaaagttggacttggaacataaattttgtttccctgcc |
113 |
Q |
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| T |
54280642 |
aataatttcattaagttttacgacatgaaaaagggtggcttttaggaaatgggaatggatggaaaagttggatttggaacataaattttgtttccctgcc |
54280741 |
T |
|
| Q |
114 |
ttctctctatttttcatgtgtcatgaagtgaagattatgaaactaaaacacttcattgtgcaccaaacaaaatatctccaatgtctagtgtagttaatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54280742 |
ttctctctatttttcatgtgtcatgaagtgaagattatgaaactaaaacacttcattgtgcaccaaacaaaatatctccaatgtctagtgtagttaatat |
54280841 |
T |
|
| Q |
214 |
atatcatgtagctcaagtaggtaacatatattgctttccgatttccatgttcgtataggatgatgccctttaaaccattttgatatcacgcatcaagtat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
54280842 |
atatcatgtagctcaagtaggtaacatatattgctttccgatttccatgttcgtataggatgatgccctttaaaccgttttgatatcactcatcaagtat |
54280941 |
T |
|
| Q |
314 |
gagtagaaatttcttacaacaaactcgaaaagagtttgcctttaccttgcctatcttatgaattatcaatcatcaacttatcacacaattgagtgtggtc |
413 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54280942 |
gagtagaaatgtcttacaacaaactcgaaaagagtttgcctttaccctgcctatcttatgaattatcaatcatcaacttatcacacaattgagtgtggtc |
54281041 |
T |
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| Q |
414 |
cttaatcttttcttctctctcga |
436 |
Q |
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||||||||||| ||||||||||| |
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| T |
54281042 |
cttaatctttttttctctctcga |
54281064 |
T |
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