View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11470_high_23 (Length: 379)
Name: NF11470_high_23
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 91 - 369
Target Start/End: Complemental strand, 44625429 - 44625147
Alignment:
| Q |
91 |
agtataattcttggacacatttcaatggtaaaacagttgatcgtaactattatcaatattctttactgcagaatttgaagtaattaaaatactagcatag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44625429 |
agtataattcttggacacatttcaatggtaaaacagttgatcgtaactattatcaatattctttactgcagaatttgaagtaattaaaatacttgcatag |
44625330 |
T |
|
| Q |
191 |
agggacaatggtaaagcaattgaactctacaataaaacataactaacattttatgttaccaacagacaactgtagtctcataataattattatcactgga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625329 |
agggacaatggtaaagcaattgaactctacaataaaacataactaacattttatgttaccaacagacaactgtagtctcataataattattatcactgga |
44625230 |
T |
|
| Q |
291 |
aaacagccatactagtactcaattg----nnnnnnnncataaggccacagttaattgagcacgaaaataaatttgcatataaa |
369 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44625229 |
aaacagccatactagtactcaattgaaaaaaaaaaaacataaggccacagttaattgagcacgaaaataaatttgcaaataaa |
44625147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 44652495 - 44652388
Alignment:
| Q |
144 |
caatattctttactgcagaatttgaagtaattaaaatactagcatagagggacaatggtaaagcaattgaactctacaataaaacataactaacatttta |
243 |
Q |
| |
|
|||||||||| | ||||||||||| |||| |||| |||||| ||||||||||| ||||| |||||| |||| ||||||||||||| ||||||| || |
|
|
| T |
44652495 |
caatattcttcatggcagaatttgatgtaaagaaaacactagctaagagggacaatcgtaaaacaattggactcgacaataaaacatacctaacatattg |
44652396 |
T |
|
| Q |
244 |
tgttacca |
251 |
Q |
| |
|
|||||||| |
|
|
| T |
44652395 |
tgttacca |
44652388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 44681411 - 44681299
Alignment:
| Q |
144 |
caatattctttactgcagaatttgaagtaattaaaatactagcatagagggacaatggtaaagcaattgaactctacaataaaacataactaacatttta |
243 |
Q |
| |
|
|||||||||| | ||||||||||| |||| |||| |||||| ||||||||||| ||||| |||||| |||| ||||| ||||||| ||||||| || |
|
|
| T |
44681411 |
caatattcttcatggcagaatttgatgtaaagaaaacactagctaagagggacaatcgtaaaacaattggactcgacaatcaaacatacctaacatattg |
44681312 |
T |
|
| Q |
244 |
tgttaccaacaga |
256 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
44681311 |
tgttaccagcaga |
44681299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University