View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11470_high_24 (Length: 376)
Name: NF11470_high_24
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11470_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 6087649 - 6087996
Alignment:
| Q |
19 |
ccaaggtcataaagatcttgacacaaatattctaatatcaatgcagtgttcacatcatcaagtacaatgtaaacttttctcccactaagcatcctcttga |
118 |
Q |
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| T |
6087649 |
ccaaggtcataaagatcttgacacaaatattctaatatcaatgcagtgttcacatcatcaagtacaatgtaaacttttctaccactcagcctcctccaaa |
6087748 |
T |
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| Q |
119 |
tgaatatggatccatgctcagttgctttgatttgtcgatttagtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttc |
218 |
Q |
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| T |
6087749 |
tcgatgcagatccatgctcagttgctttgatttgtcgatttagtagctcaccaagaaggttattacgaacatgtattagtccgagttttactacatcttc |
6087848 |
T |
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| Q |
219 |
acttacattttccaaaaaacaggcactgtcatattgtgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccat |
318 |
Q |
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| T |
6087849 |
acttacattttccaaaaagcaagcgctgtcatattctgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccat |
6087948 |
T |
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| Q |
319 |
attccaattctttgatactttttcagtagtgattcagtatatcctatg |
366 |
Q |
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| T |
6087949 |
attccaattctttgatactttttcagtagtgattcagtatatcctatg |
6087996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 125 - 363
Target Start/End: Original strand, 6062577 - 6062815
Alignment:
| Q |
125 |
tggatccatgctcagttgctttgatttgtcgatttagtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttcacttac |
224 |
Q |
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| T |
6062577 |
tggatcgatgctcagttggtgttatttgtcgatttagtagctcactgagaagattactacgaacttgcatttgtttaaatttgtctacttcttcacatgc |
6062676 |
T |
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| Q |
225 |
attttccaaaaaacaggcactgtcatattgtgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattcca |
324 |
Q |
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| T |
6062677 |
attttccagaaagcaagcactttcatattgtgcaaagtgcttggcaaacatctgtctggctatggttgtctttcctattcctcccatgccccaaattcca |
6062776 |
T |
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| Q |
325 |
attctttgatactttttcagtagtgattcagtatatcct |
363 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
6062777 |
attctttgatactttttcagtagtgattcagtatctcct |
6062815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 359
Target Start/End: Original strand, 6046357 - 6046568
Alignment:
| Q |
148 |
atttgtcgatttagtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttcacttacattttccaaaaaacaggcactgt |
247 |
Q |
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| T |
6046357 |
atttgtcgcttaagcagctcactaagaagcttattacggatgtaccttggtccaaacttttctatttcttcacttacattttccataaagcaagcgcttt |
6046456 |
T |
|
| Q |
248 |
catattgtgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctttgatactttttcagtag |
347 |
Q |
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| T |
6046457 |
catattgtgcaaagtgctttgcaaacatctgtctggctatggttgtcttccctattccacccatgccccaaattccaattcttgaatatcttttcagcag |
6046556 |
T |
|
| Q |
348 |
tgattcagtata |
359 |
Q |
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||| |||||||| |
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| T |
6046557 |
tgactcagtata |
6046568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 6178959 - 6179129
Alignment:
| Q |
160 |
agtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttcacttacattttccaaaaaacaggcactgtcatattgtgcaa |
259 |
Q |
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|||||||||| |||||| | ||||||||||| |||| |||| | |||||| ||||| ||||| |||||||| || || || ||||||| || |||| |
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| T |
6178959 |
agtagctcacgaagaagctgattacgaacatatattggtcccaacttttctgagtcttcgcttaccttttccaagaagcatacattgtcataatgggcaa |
6179058 |
T |
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| Q |
260 |
agtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctt |
330 |
Q |
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||| |||||||||||| ||| | ||||||||||||||||| ||||| | ||||||||| |||||||||||| |
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| T |
6179059 |
agttcttggcaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattctt |
6179129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 6187749 - 6187919
Alignment:
| Q |
160 |
agtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttcacttacattttccaaaaaacaggcactgtcatattgtgcaa |
259 |
Q |
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| T |
6187749 |
agtagctcacgaagaagctgattacaaacatatattggtccaaacttttccgagtcttcgcttatcttttccaagaagcatacattgtcataatgggcaa |
6187848 |
T |
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| Q |
260 |
agtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctt |
330 |
Q |
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| T |
6187849 |
agttcttggaaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattctt |
6187919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 6140902 - 6141072
Alignment:
| Q |
160 |
agtagctcaccaagaagattattacgaacatgtattagtccaagtttttctacatcttcacttacattttccaaaaaacaggcactgtcatattgtgcaa |
259 |
Q |
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|||||||||| |||||| ||||||||||||| |||| |||| | |||||| |||||| ||| |||||||| || || || | ||||| | | || |
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| T |
6140902 |
agtagctcactaagaagcttattacgaacatatatttgtccgaacttttctgattcttcatttatcttttccaagaagcatacattatcataatagggaa |
6141001 |
T |
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| Q |
260 |
agtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctt |
330 |
Q |
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| T |
6141002 |
agttcttggcaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaactctt |
6141072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 6071784 - 6071863
Alignment:
| Q |
246 |
gtcatattgtgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaa |
325 |
Q |
| |
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||||||||| |||||||| |||||||||| | |||| |||||||||||||| || || ||||||||||| ||||||| |
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| T |
6071784 |
gtcatattgagcaaagtgtttggcaaacaagactttggcgatggttgtctttcccataccgcccatgccccaaattccaa |
6071863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 6123833 - 6123762
Alignment:
| Q |
259 |
aagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctt |
330 |
Q |
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| T |
6123833 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattctt |
6123762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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