View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11470_high_25 (Length: 366)

Name: NF11470_high_25
Description: NF11470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11470_high_25
NF11470_high_25
[»] chr5 (14 HSPs)
chr5 (1-351)||(33821534-33821884)
chr5 (18-192)||(33734221-33734395)
chr5 (95-178)||(33762760-33762843)
chr5 (104-192)||(33748779-33748867)
chr5 (104-192)||(33834899-33834987)
chr5 (95-179)||(33904390-33904474)
chr5 (96-181)||(33679811-33679896)
chr5 (95-181)||(33865881-33865967)
chr5 (102-181)||(33698534-33698613)
chr5 (266-348)||(33749004-33749086)
chr5 (268-324)||(33734534-33734590)
chr5 (266-324)||(33904591-33904649)
chr5 (273-348)||(33846606-33846681)
chr5 (267-324)||(33763363-33763420)
[»] scaffold0023 (1 HSPs)
scaffold0023 (83-187)||(114199-114303)
[»] scaffold0247 (2 HSPs)
scaffold0247 (92-191)||(22142-22241)
scaffold0247 (5-49)||(22284-22328)
[»] scaffold0193 (2 HSPs)
scaffold0193 (104-191)||(25206-25293)
scaffold0193 (266-324)||(24375-24433)
[»] chr8 (2 HSPs)
chr8 (104-182)||(21305875-21305953)
chr8 (5-56)||(21305776-21305827)
[»] chr7 (3 HSPs)
chr7 (93-179)||(5471194-5471280)
chr7 (268-324)||(5470215-5470271)
chr7 (5-50)||(5471317-5471362)
[»] scaffold0001 (2 HSPs)
scaffold0001 (93-179)||(148773-148859)
scaffold0001 (274-324)||(149000-149050)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 33821534 - 33821884
Alignment:
Q  1 aaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggtctctcnnnnnnnnnnnnnnctactgattctgaaagaaccttctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||              |||||||||||||||||||||||||    
T  33821534 aaagagttataggtcgaggtataataacttcatgagctttcattgtttccttaggtctctctttttcatttttttctactgattctgaaagaaccttctt 33821633  T
Q  101 ccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtataaatacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821634 ccgcaaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtataaatacatt 33821733  T
Q  201 agctaaaatgttatctaaaaaatacatcatacttaattctagctaggctacatgcattgccctaattggaagcttacctattccctaggagattgtgtaa 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  33821734 agctaaaatgttatctaaagaatacatcatacttaattctagctaggctacatgcatttccctaattggaagcttacctattccccaggagattgtgtaa 33821833  T
Q  301 ccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatatt 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33821834 ccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatatt 33821884  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 33734221 - 33734395
Alignment:
Q  18 ggtttaataacttcatgagctttcattgtttcctcaggtctctcnnnnnnnnnnnnnnctactgattctgaaagaaccttcttccgcaaatgtgtgttcc 117  Q
    |||||||||||||||||||||||||||||||||| |||| ||||              ||  || |||||||| ||||||||||||||||||||||| ||    
T  33734221 ggtttaataacttcatgagctttcattgtttccttaggtttctctttttctttcttttcttttgtttctgaaacaaccttcttccgcaaatgtgtgtgcc 33734320  T
Q  118 aatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtata 192  Q
    || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33734321 aaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctatattatatgtata 33734395  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 33762760 - 33762843
Alignment:
Q  95 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatct 178  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  33762760 cttcttccgcaaatttgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 33748779 - 33748867
Alignment:
Q  104 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtata 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||   |||| |||||||||||||| | ||||||||||||||||||||    
T  33748779 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatatgtata 33748867  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 33834899 - 33834987
Alignment:
Q  104 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtata 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||   |||| |||||||||||||| | ||||||||||||||||||||    
T  33834899 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatatgtata 33834987  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 33904390 - 33904474
Alignment:
Q  95 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 179  Q
    |||||| | ||||||||||| |||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  33904390 cttctttctcaaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 33679811 - 33679896
Alignment:
Q  96 ttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 181  Q
    ||||| ||||||| ||||| |||||| || ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  33679811 ttcttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 33679896  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 33865881 - 33865967
Alignment:
Q  95 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 181  Q
    |||||| || |||||||||| |||||| || ||||||||||||||||||||||  || || ||||||||||||||||||||||||||    
T  33865881 cttcttgcgtaaatgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

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Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 33698534 - 33698613
Alignment:
Q  102 cgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 181  Q
    ||||||| ||||| |||||| || ||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  33698534 cgcaaatttgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctata 33698613  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 33749004 - 33749086
Alignment:
Q  266 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgat 348  Q
    |||||||||||||||||||| | ||| ||||||||||| | |||||||||||||||||| || | || | |||||||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgat 33749086  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 33734534 - 33734590
Alignment:
Q  268 ggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatc 33734590  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 33904591 - 33904649
Alignment:
Q  266 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    ||||||| ||||||||||||||| || |||||||||||||  ||||||||| |||||||    
T  33904591 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatc 33904649  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 33846606 - 33846681
Alignment:
Q  273 cttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgat 348  Q
    |||||||||| || | ||| ||||||||||| | |||||||||||||||||| || | || | |||||||||||||    
T  33846606 cttacctatttcccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgat 33846681  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 33763363 - 33763420
Alignment:
Q  267 tggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    |||||||||||||||| ||||| || || |||||||||| ||||| |||| |||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatc 33763420  T

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Target: scaffold0023 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 114303 - 114199
Alignment:
Q  83 ttctgaaagaaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatat 182  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||   ||||||||| | |||||||||||||||||||||    
T  114303 ttctaaaacaaccttcttcctcaaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatctatat 114204  T
Q  183 tatat 187  Q
    |||||    
T  114203 tatat 114199  T

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Target: scaffold0247 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 22241 - 22142
Alignment:
Q  92 aaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtat 191  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||  ||||||||    
T  22241 aaccttctttcgtaaatgtgtattccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatctgtacgatatgtat 22142  T

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Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 22328 - 22284
Alignment:
Q  5 agttataggtcgaggtttaataacttcatgagctttcattgtttc 49  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  22328 agttataggccgaggtttaataacctcatgagctttcattgtttc 22284  T

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Target: scaffold0193 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 25293 - 25206
Alignment:
Q  104 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtat 191  Q
    |||||| ||||||||||||||||||||||||||||||| |||||   |||| |||||||||||||||| |||||||||||||||||||    
T  25293 caaatgggtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctatattatatgtat 25206  T

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Target: scaffold0193; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 24433 - 24375
Alignment:
Q  266 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    ||||| |||||||||||||||||||| |||||||||||||  || | ||||||||||||    
T  24433 ttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatc 24375  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 21305875 - 21305953
Alignment:
Q  104 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatat 182  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  21305875 caaatttgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctatat 21305953  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 21305776 - 21305827
Alignment:
Q  5 agttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggt 56  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  21305776 agttataggacgaggtttaataacttcatgagctttcatggtttccttaggt 21305827  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 5471280 - 5471194
Alignment:
Q  93 accttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 179  Q
    |||||||||  ||| ||||||||||||||||||||||||  ||||||||||||||  ||||||||| ||||||||||||||||||||    
T  5471280 accttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 5470271 - 5470215
Alignment:
Q  268 ggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    ||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||||    
T  5470271 ggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatc 5470215  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 5471362 - 5471317
Alignment:
Q  5 agttataggtcgaggtttaataacttcatgagctttcattgtttcc 50  Q
    ||||||||||| ||||||||||||||  |||||||||||||| |||    
T  5471362 agttataggtctaggtttaataacttggtgagctttcattgtctcc 5471317  T

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Target: scaffold0001 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 148773 - 148859
Alignment:
Q  93 accttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 179  Q
    ||||||||  |||| ||||||| ||||||||| || ||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  148773 accttcttgtgcaagtgtgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 149000 - 149050
Alignment:
Q  274 ttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatc 324  Q
    ||||||||||||||| || ||||||||||||| |||||||||  |||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatc 149050  T

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